PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278255.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 475aa MW: 51803.3 Da PI: 6.648

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.5	5.9e-17	153	202	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_021278255.1 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 202 78*****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MLDLNLNAAS TELTQDSDSA APFTDKFNEG SGNQMDESGT SNSSVVNDDD ESCSTRANGD 60 AFTLSFDILR VGSGGSEYPN DDAAMVVTKE LFPVKGVGGD FGSCEGQSSG NGNNNKWIDL 120 SFERKEAGEP RMMQQQASQT VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 GGFDTAHAAA RAYDRAAIKF RGVDADINFT LSDYEEDMTQ MKNLTKEEFV HILRRQSTGF 240 SRGSSKYRGV TLHKCGRWEA RMGQFLGKKA YDKAAIKCNG REAVTNFEPS SYEGEMTFDT 300 SNEGNDHNLD LNLGISPPVG KGLKENEGHL HFHTGPYDMH GAKSLRAENP CAATVGGPPI 360 KGLVGASDQP IFWNSGYPRF FPSEERATVK RVELGPPQGL PDWAWQTHGQ VSVTPMPLFS 420 TAASSGFSFS ATPPSAAILP SRPLNPTTHS LCFASPGATS TPQTYFHIKP PQAPP

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MLDLNLNAAS TELTQDSDSA APFTDKFNEG SGNQMDESGT SNSSVVNDDD ESCSTRANGD  60
AFTLSFDILR VGSGGSEYPN DDAAMVVTKE LFPVKGVGGD FGSCEGQSSG NGNNNKWIDL  120
SFERKEAGEP RMMQQQASQT VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL  180
GGFDTAHAAA RAYDRAAIKF RGVDADINFT LSDYEEDMTQ MKNLTKEEFV HILRRQSTGF  240
SRGSSKYRGV TLHKCGRWEA RMGQFLGKKA YDKAAIKCNG REAVTNFEPS SYEGEMTFDT  300
SNEGNDHNLD LNLGISPPVG KGLKENEGHL HFHTGPYDMH GAKSLRAENP CAATVGGPPI  360
KGLVGASDQP IFWNSGYPRF FPSEERATVK RVELGPPQGL PDWAWQTHGQ VSVTPMPLFS  420
TAASSGFSFS ATPPSAAILP SRPLNPTTHS LCFASPGATS TPQTYFHIKP PQAPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.1	1e-131	AP2 family protein