PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278094.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 430aa MW: 47878.2 Da PI: 7.8714

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278094.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	364	409	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + a++L +Av+YIk+Lq XP_021278094.1 364 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 409 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MESDLQHHHH HLLDYHQPQH HQKQMNSGLM RYQSAPSSYF SSILDRDFCQ EFLNRPSSPE 60 TERIIERFLS SSGDGGGGNT VNISDQNLCE ITQNSPVRET VIKIEEPTQI MTPINNQTGV 120 MQQQQQPQQG NYSSASQNFY QSQPQQHLRN QQSGSTMDYR IPNSVGMARP TQMKMGGGNN 180 SNLIRHSSSP AGLFSNLNID NIAGYGVMRG MGDYGGVNSS NREASFPSAS RPPPSGLMSP 240 IAEMGNKNMG PKCSENAGFG ENRHNNYSSG FPVTSWDDSM MISDNMPGVK RLREDDRSLS 300 GLDLDGAETQ NTDAGNRPPP ILAHHLSLPK SSAEMSAIDK FLQYQDSVPC KIRAKRGCAT 360 HPRSIAERVR RTKISERMRK LQDLVPNMDK QTNTADMLDL AVDYIKDLQK QVKTLSDNRA 420 KCSCSNKQQQ

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MESDLQHHHH HLLDYHQPQH HQKQMNSGLM RYQSAPSSYF SSILDRDFCQ EFLNRPSSPE  60
TERIIERFLS SSGDGGGGNT VNISDQNLCE ITQNSPVRET VIKIEEPTQI MTPINNQTGV  120
MQQQQQPQQG NYSSASQNFY QSQPQQHLRN QQSGSTMDYR IPNSVGMARP TQMKMGGGNN  180
SNLIRHSSSP AGLFSNLNID NIAGYGVMRG MGDYGGVNSS NREASFPSAS RPPPSGLMSP  240
IAEMGNKNMG PKCSENAGFG ENRHNNYSSG FPVTSWDDSM MISDNMPGVK RLREDDRSLS  300
GLDLDGAETQ NTDAGNRPPP ILAHHLSLPK SSAEMSAIDK FLQYQDSVPC KIRAKRGCAT  360
HPRSIAERVR RTKISERMRK LQDLVPNMDK QTNTADMLDL AVDYIKDLQK QVKTLSDNRA  420
KCSCSNKQQQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	2e-75	bHLH family protein