PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021277981.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92252 Da    PI: 6.0523
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021277981.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-182683457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_021277981.1 26 YVRYTAEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                    5789****************************************************97 PP
2START160.61.2e-501653722204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W ++++  e+      g  g+++l 
  XP_021277981.1 165 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRNLEVFTMFPAGngGTIELV 258
                     7899******************************************************.7777777777*******9999999998888****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h++l++++++++lr+l+
  XP_021277981.1 259 YTQTYAPTTLAPaRDFWTLRYTTTLENGSLVVCERSLSGSGAGPSaaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVLRPLY 353
                     **************************************99999988999********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++ a+l++ +
  XP_021277981.1 354 ESSKVVAQKMTIAALRYIR 372
                     **************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    
MAMAVAQHRE SSSGSSINKH LDAGKYVRYT AEQVEALERV YSECPKPSSL RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC  120
ENGYMRQQLH TVNASAATDA SCDSVVTTPQ HSLRDANNPA GLLSIAEETL AEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISQSCSGVA ARACGLVSLE PTKIAEILKD RPSWFRDCRN  240
LEVFTMFPAG NGGTIELVYT QTYAPTTLAP ARDFWTLRYT TTLENGSLVV CERSLSGSGA  300
GPSAAAAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHMNL EAWSVPEVLR PLYESSKVVA  360
QKMTIAALRY IRQIAQETSG EVVYGLGRQP AVLRTFSQRL SRGFNDAING FNDDGWSIMN  420
CDGAEDVIIA INSSKNLSST SNPANALSFL GGVLCAKASM LLQNVPPAVL VRFLREHRSE  480
WADFNVDAYS AASLKAGTYS YPGMRPTRFT GSQIIMPLGH TIEHEELLEV IRLEGHSLAQ  540
EDAFLSRDIH LLQICSGIDE NAVGACSELV FAPIDEMFPD DAPLLPSGFR IIPLDSKPSD  600
TQDSLTTNRT LDLTSSLEVG TATNHAAGDA PSCQNSRSVL TIAFQFPFDS NLQDNVAAMA  660
RQYVRSVIAS VQRVAMAISP SGLIPTVGPK LSPGSPEALT LAHWICQSYS YHLGAELLRA  720
ESHGDDAVLK NLWQHQDAIL CCSLKSLPVF IFANQAGLDM LETTLVALQD ITLDKIFDES  780
GRKALCSDFA KLMQQGFAYL PAGICMSTMG RHVSYEQAVA WKVLAADEST VHCLAFSFVN  840
WSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein