PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021277878.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 322aa    MW: 36286.8 Da    PI: 4.5492
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021277878.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.1e-10139182755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ErrRR r+++++  Lr+l+P+      ++++Ka+i   Av+Y+++Lq
  XP_021277878.1 139 ISERRRRGRMKEKLYALRSLVPNI-----TRMDKASIIGDAVRYVQDLQ 182
                     67*********************7.....6******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MDVSRDYSLE LPNDFELHDF IDDPNFDQFI DLIRGENKDS VADFDYDLVN SCCVDKQIGS  60
TAGDAFGFNA SRAMVPDPNY LYNALSSFDG EIMKYGEEDN DDDDDDEYTS GTTTTTITTT  120
TTTGTATKKA KVDRSRTLIS ERRRRGRMKE KLYALRSLVP NITRMDKASI IGDAVRYVQD  180
LQMQATKLKA EIAGLEASLT GSERYQEPID KPVKIRVARN SHPMCKKIMQ MDMFQVEERG  240
FYIRLVCDKG EGVAVSLYKA LETLTNFKVQ NSNLTTASER FVLTFTLNVG DFELSMNLPN  300
LKLWVTGALL NQGFEFTTPL SS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.12e-84bHLH family protein