PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021277574.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 533aa MW: 61183.3 Da PI: 6.5791

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021277574.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.9	1.3e-06	95	117	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff+ G+C+ G+rC+F Hgp XP_021277574.1 95 VPCYFFFN-GFCNKGNRCSFLHGP 117 69****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MQSINIMEEE FLKRSTDCVY FLASPLTCKK GIDCEYRHSE IARLNPRDCW YWLAGNCINP 60 TCGFRHPPLD GYTQVSSESA ALPYQCSAPA NKTNVPCYFF FNGFCNKGNR CSFLHGPDDN 120 ATTENALKTD ALPMDQKKSF ENDAGAAPTE RHPNPSKMAP KPSKEMGAQF KEDLQQSNPK 180 TMPQKSVSPK MSVIEFEESV FVESGSLLLK DGITESRSPI CTDNSSEEQV DDRVEPEERW 240 ESSPGFDVLV DNKSEDLDYE NDSEYLLVPE EEQMEQFLSY DYEDSVQHEA RNPKVELWHD 300 RDVYDAYEGS DNEFISDNAR NPPAHPIDRR LDSIFIHKRR RLWPELSDDE QMGVDLRDYL 360 SKRRVVEGNP PNFLSRMSEY SHLLGRRSER PQRYIMRQKL RGRLGSKVGK HSFESIRDQG 420 YFSNGTNRRG WLKRLEPKHS TRGSYREKWL PRRKSVSSEV SRNLISRERK STHASTAFTG 480 PKTLAQIKEE KKKTEENIGK MRHSGRTASA YFLGPKPLSE ILKDKGGPDP LTD

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MQSINIMEEE FLKRSTDCVY FLASPLTCKK GIDCEYRHSE IARLNPRDCW YWLAGNCINP  60
TCGFRHPPLD GYTQVSSESA ALPYQCSAPA NKTNVPCYFF FNGFCNKGNR CSFLHGPDDN  120
ATTENALKTD ALPMDQKKSF ENDAGAAPTE RHPNPSKMAP KPSKEMGAQF KEDLQQSNPK  180
TMPQKSVSPK MSVIEFEESV FVESGSLLLK DGITESRSPI CTDNSSEEQV DDRVEPEERW  240
ESSPGFDVLV DNKSEDLDYE NDSEYLLVPE EEQMEQFLSY DYEDSVQHEA RNPKVELWHD  300
RDVYDAYEGS DNEFISDNAR NPPAHPIDRR LDSIFIHKRR RLWPELSDDE QMGVDLRDYL  360
SKRRVVEGNP PNFLSRMSEY SHLLGRRSER PQRYIMRQKL RGRLGSKVGK HSFESIRDQG  420
YFSNGTNRRG WLKRLEPKHS TRGSYREKWL PRRKSVSSEV SRNLISRERK STHASTAFTG  480
PKTLAQIKEE KKKTEENIGK MRHSGRTASA YFLGPKPLSE ILKDKGGPDP LTD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	342	KRRRL