PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021277390.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 470aa MW: 48910.3 Da PI: 6.5706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021277390.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.6e-12	263	308	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq XP_021277390.1 263 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 308 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MQPCSREMQT MNSLLNPTQQ IPLQDLQNNG NSNGHQQIQN PQFDPTSSHD DFLEQMLSAL 60 PSCSWSDLKS PWDPAKADET GGANLDNNVG FHYDEILASK LRQHQINGGG GSSPATAAMK 120 MMMQQQMMLA GRAAAAAASG GGGGGGGGLT MPLSLGSSAA GSHQNDIVDG SSFKSPNHQG 180 GEGSVQALFN SFGAGSLHGT NPSSNQPQHF HHPQGGTMQQ AQNFGAPAGT VMNQSQASGS 240 TGVTPAQPKQ RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK TDKASMLDEI 300 IDYVKFLQLQ VKVLSMSRLG GAAAVAPLVA DMPSEGGGDC IQTSANGGSL PRNSNGNQTS 360 STNDSLTVTE QQVAKLMEED MGSAMQYLQG KGLCLMPISL ATAISTATCH SRNPMINNGN 420 ANNGGNHPLL QSTGEGPSSP SMSVLTVQSA TIGNGVVDGS VKDAASVSKP

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MQPCSREMQT MNSLLNPTQQ IPLQDLQNNG NSNGHQQIQN PQFDPTSSHD DFLEQMLSAL  60
PSCSWSDLKS PWDPAKADET GGANLDNNVG FHYDEILASK LRQHQINGGG GSSPATAAMK  120
MMMQQQMMLA GRAAAAAASG GGGGGGGGLT MPLSLGSSAA GSHQNDIVDG SSFKSPNHQG  180
GEGSVQALFN SFGAGSLHGT NPSSNQPQHF HHPQGGTMQQ AQNFGAPAGT VMNQSQASGS  240
TGVTPAQPKQ RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK TDKASMLDEI  300
IDYVKFLQLQ VKVLSMSRLG GAAAVAPLVA DMPSEGGGDC IQTSANGGSL PRNSNGNQTS  360
STNDSLTVTE QQVAKLMEED MGSAMQYLQG KGLCLMPISL ATAISTATCH SRNPMINNGN  420
ANNGGNHPLL QSTGEGPSSP SMSVLTVQSA TIGNGVVDGS VKDAASVSKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	268	273	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	5e-74	bHLH family protein