PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021277381.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

ARR-B

Protein Properties

Length: 508aa MW: 56716.6 Da PI: 5.5638

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021277381.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	66.6	4.2e-21	195	249	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rl+Wtp+L ++Fv+av+ L s Pk+il++m+ + Lt+e+++SHLQkYR+ XP_021277381.1 195 KKRLVWTPDLDAKFVKAVQTLSKSSMVHPKRILKVMNEPELTRENIASHLQKYRM 249 78*****************9999***************************8 PP
2	Myb_DNA-binding	35.9	1.7e-11	197	248	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+ WT+++d ++v+av+ l + ++k+I + m+ +t++++ s++qky+ XP_021277381.1 197 RLVWTPDLDAKFVKAVQTLSKSsmvHPKRILKVMNePELTRENIASHLQKYR 248 789***************99**********99***********7 PP
3	Response_reg	58.1	5.1e-20	27	137	1	111
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl +d + + ++ l+ +l k +y +v++++++ eale+l++k+ ++++l+D++ +m+G++ll+ i e lp+i+vt+ g+ + + + l +G XP_021277381.1 27 VLAIDAQIFSLQYLCAVLHKCNY-KVKTTTSAAEALEILRAKKyeFNIVLVDVDSANMNGFKLLEIIGLEM-YLPVIMVTGDGSLQNIMKGLIYG 119 56677788889999*******.***********998888******************5544.7****************** PP ESEEEESS--HHHHHHHH CS Response_reg 94 akdflsKpfdpeelvkav 111 a d++ Kp+ +e+ +++ XP_021277381.1 120 AVDYIIKPVRVQEIKNTI 137 ***********99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MEESFLNKGS ENSVVEVDDN AVHELHVLAI DAQIFSLQYL CAVLHKCNYK VKTTTSAAEA 60 LEILRAKKYE FNIVLVDVDS ANMNGFKLLE IIGLEMYLPV IMVTGDGSLQ NIMKGLIYGA 120 VDYIIKPVRV QEIKNTIWHS VTLNKMWDSE QSTDNAETSD HQNLKPLEHS HATITVEDDK 180 DNVRLDDTSS SCQKKKRLVW TPDLDAKFVK AVQTLSKSSM VHPKRILKVM NEPELTRENI 240 ASHLQKYRMS LKKRKVEMNQ QGFDIKSVTG YSSTRRSNRR NGEAGDFNAD RVAVPSFNPF 300 HSFEDMNSIF LDPIRGGNTV MSQHRTPYVG LLDPEKPYQS VPYSCLDDPN FQTPDFKHFS 360 YYNYCLGLNI QLHNPGSEPL SGTTSRSPYF HDMGSEHSTP SSAPFYPFSN ACFAPETDVA 420 FQSPFAVASV PDLFPGGIPN YGGLIVDCTN NVQYPGSRGL TCNFGGTELA SNGTTKSRDD 480 TVSEMDDNQL SDHGPPDSLQ ILATYSSQ

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MEESFLNKGS ENSVVEVDDN AVHELHVLAI DAQIFSLQYL CAVLHKCNYK VKTTTSAAEA  60
LEILRAKKYE FNIVLVDVDS ANMNGFKLLE IIGLEMYLPV IMVTGDGSLQ NIMKGLIYGA  120
VDYIIKPVRV QEIKNTIWHS VTLNKMWDSE QSTDNAETSD HQNLKPLEHS HATITVEDDK  180
DNVRLDDTSS SCQKKKRLVW TPDLDAKFVK AVQTLSKSSM VHPKRILKVM NEPELTRENI  240
ASHLQKYRMS LKKRKVEMNQ QGFDIKSVTG YSSTRRSNRR NGEAGDFNAD RVAVPSFNPF  300
HSFEDMNSIF LDPIRGGNTV MSQHRTPYVG LLDPEKPYQS VPYSCLDDPN FQTPDFKHFS  360
YYNYCLGLNI QLHNPGSEPL SGTTSRSPYF HDMGSEHSTP SSAPFYPFSN ACFAPETDVA  420
FQSPFAVASV PDLFPGGIPN YGGLIVDCTN NVQYPGSRGL TCNFGGTELA SNGTTKSRDD  480
TVSEMDDNQL SDHGPPDSLQ ILATYSSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	7e-52	ARR-B family protein