PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021277238.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HSF
Protein Properties Length: 320aa    MW: 35573.8 Da    PI: 5.1378
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021277238.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.21.7e-35281182101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  XP_021277238.1  28 FLTKTYQLVDDRTIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKRLLCE 113
                     9*****************************************************************99.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_021277238.1 114 IQRRK 118
                     ***98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MAPPPVEQNG EATAAAAGES QRSVPTPFLT KTYQLVDDRT IDDVISWNDD GSTFIVWNPT  60
VFARDLLPKY FKHNNFSSFV RQLNTYGFRK VVPDRWEFSN DCFRRGEKRL LCEIQRRKIM  120
TPTTAAITVS TMTGIPIAKP IISPSNSGDE QSPVISSTSS PSRPGQTGSV TAELMEENEK  180
LRKENVQLNK QLVEMKSLCN NIFNLMSNYA SSQSGSSFVA TKPLDLLPVK RLSEEGEEEE  240
TSPRLFGVPI GGVKRAREEG EGLAAGDETQ LQLQQPGGTA SEMIKSEPLD CQNAGRDDER  300
GNQDTPWLRQ FHRANQRVCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-101HSF family protein