PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021277034.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 302aa    MW: 33643.8 Da    PI: 9.5825
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021277034.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19171204134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+ C+ttkTplWR+gp+g+k+LCnaCG+++rk +
  XP_021277034.1 171 CADCNTTKTPLWRSGPRGPKSLCNACGIRQRKAR 204
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MTSSNCYSSL YPFPIDLNED DQHQQHQLFS LKPQPPSLSS SSLTCPILFN PAVQEQAGGH  60
QREPHQLFQY QEDQAKIYVP QDEPLESDSG LNLSLRKKEE GNENHQIENS SAKWMSSKMR  120
MMRKMISSDH ADLSNSSTRK LVEQKQQPSS SPDNSSNSSY NNNDNITIRV CADCNTTKTP  180
LWRSGPRGPK SLCNACGIRQ RKARRAMAAA AAANGTIVAA QTTPTMKSKL QDKSKRSSNS  240
GCVAQLKKKC KHNSQSQGRK KLCFEDLRTI LSKNSAFHRV FPQDEKEAAI LLMALSYGLV  300
HG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-16GATA family protein