PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276986.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 300aa MW: 33122.4 Da PI: 5.1678

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.9	3.6e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed +l + ++++G+g +W + +r+ g++R++k+c++rw++yl XP_021276986.1 14 RGPWSPDEDNILRNFIEKHGTGgNWIALPRKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	36.7	9.8e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd + + G++ W+ Ia+ ++ gRt++++k++w++ XP_021276986.1 69 GGFTEEEDNVICSFYRSIGSR-WSVIAAQLQ-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MGRAPCCDKA NVNRGPWSPD EDNILRNFIE KHGTGGNWIA LPRKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNVIC SFYRSIGSRW SVIAAQLQGR TDNDIKNYWN TKLKKKLLAG 120 KVGLNKTSNN EITTDSSTSN LNSGQFSASI PSEAEARAYG NSDYLNANGS TSSSYMTEMN 180 HRQNYDYPGL ILDQIDQFPL PGLMEVPDYS TSTANNNYSM SSSQEVSSLS NSSSFPMENM 240 SYATTWSGKG GAEDQGLVPD LDFDGPHDLF SGLTFQAKSS EEDAPCFGNF YSTTSLSNSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	8e-68	MYB family protein