PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276978.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 632aa MW: 70178.2 Da PI: 7.2954

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276978.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.6e-06	347	361	12	26
TS--TTTTT-SS-SS CS zf-CCCH 12 tGtCkyGdrCkFaHg 26 +G C++G++C+F H+ XP_021276978.1 347 SGSCPRGEKCNFQHD 361 69************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 632 aa Download sequence
MAPPRILLCG DVLGRLNQLF KRVNSVNKSA GPFDSLFCVG QFFPDETDRL DELMDYVEGR 60 AQIPLPTYFI GDYGVGAAKV LSAASKNSAN QGFKMDGFKI CDNLFWLKGS GKFTLHGLSV 120 AYLSGRQLSS GQQFGSYSED DIDALRAFAE EPGIVDLFLS NEWPSGVTNR AAVSDIPSGM 180 SDSSGSDSTV SQLVAEIKPR YMILSFTYNL HGRRPYSQGD VTNESYHIAG TKGAFYAREP 240 YSNVDAVHVT RFLGLASVGN KEKQKFLHAL SPTPSSAMSA AEISTKPPNT TLSPYALADQ 300 VDRPKEATKR AGDNAPDSQY WRYDVSNKRQ KHGNGDGNKV CFKFISSGSC PRGEKCNFQH 360 DVDAREQFLR GVCLDFIIKG KCEKGPDCNF KHSLQDEGES YSRKRPGSGN NNAIRLKECW 420 FCLSSPNVEI HLVTSIGENF YCALAKGPLV QDHVLLIPVE HLPNTLCLSA DGEIELGKFQ 480 NSVKMYYKNQ GKEAVFFEWI SKRGTHANLQ AVPVPSSKAA ALKDIFNLAA EKLGFEFVTK 540 KFNNNSEGRK WLRTQFDKNL SCFYVELPEG SILSHLVEEN EKFPAQFGRE VLAGLLNMAD 600 RADWRNCTLG KEEETKLAEN FKKRFEVFDP SH

Sequence ? help Back to Top

Protein Sequence Length: 632 aa Download sequence

MAPPRILLCG DVLGRLNQLF KRVNSVNKSA GPFDSLFCVG QFFPDETDRL DELMDYVEGR  60
AQIPLPTYFI GDYGVGAAKV LSAASKNSAN QGFKMDGFKI CDNLFWLKGS GKFTLHGLSV  120
AYLSGRQLSS GQQFGSYSED DIDALRAFAE EPGIVDLFLS NEWPSGVTNR AAVSDIPSGM  180
SDSSGSDSTV SQLVAEIKPR YMILSFTYNL HGRRPYSQGD VTNESYHIAG TKGAFYAREP  240
YSNVDAVHVT RFLGLASVGN KEKQKFLHAL SPTPSSAMSA AEISTKPPNT TLSPYALADQ  300
VDRPKEATKR AGDNAPDSQY WRYDVSNKRQ KHGNGDGNKV CFKFISSGSC PRGEKCNFQH  360
DVDAREQFLR GVCLDFIIKG KCEKGPDCNF KHSLQDEGES YSRKRPGSGN NNAIRLKECW  420
FCLSSPNVEI HLVTSIGENF YCALAKGPLV QDHVLLIPVE HLPNTLCLSA DGEIELGKFQ  480
NSVKMYYKNQ GKEAVFFEWI SKRGTHANLQ AVPVPSSKAA ALKDIFNLAA EKLGFEFVTK  540
KFNNNSEGRK WLRTQFDKNL SCFYVELPEG SILSHLVEEN EKFPAQFGRE VLAGLLNMAD  600
RADWRNCTLG KEEETKLAEN FKKRFEVFDP SH