PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276925.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 354aa MW: 40247.5 Da PI: 7.8912

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.5	1.1e-15	46	105	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g XP_021276925.1 46 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 105 57*****************999955656446***********************98 PP
2	AP2	51.3	3e-16	148	199	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_021276925.1 148 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 199 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MGKLSLQNQK NNAQNNNFSN TTSNGVTKVK RTRRSVPRDS PPQRSSIYRG VTRHRWTGRY 60 EAHLWDKNCW NESQNKKGRQ VYLGAYDDEE AAAHAYDLAA LKYWGQDTIL NFPLSTYQKE 120 LKEMEDQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY 180 ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLKPNQT NTESNPSPKI ESTSTVTTSS 240 TQELNLNFFN NNQLQASNPS DQSLPTQPRP TNATSALGLL LQSSKFKEMM EMTSTADHCQ 300 LTPVVSEPVQ CSFPEDIQTY FGCQDSSSYG DADDIIFGEL NSFMPPMFQC DFDA

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MGKLSLQNQK NNAQNNNFSN TTSNGVTKVK RTRRSVPRDS PPQRSSIYRG VTRHRWTGRY  60
EAHLWDKNCW NESQNKKGRQ VYLGAYDDEE AAAHAYDLAA LKYWGQDTIL NFPLSTYQKE  120
LKEMEDQSRE EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY  180
ATQEEAATAY DMAAIEYRGL NAVTNFDLSR YIKWLKPNQT NTESNPSPKI ESTSTVTTSS  240
TQELNLNFFN NNQLQASNPS DQSLPTQPRP TNATSALGLL LQSSKFKEMM EMTSTADHCQ  300
LTPVVSEPVQ CSFPEDIQTY FGCQDSSSYG DADDIIFGEL NSFMPPMFQC DFDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	1e-105	AP2 family protein