PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276924.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

NAC

Protein Properties

Length: 452aa MW: 51029.7 Da PI: 6.9296

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276924.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	115.6	4.9e-36	46	188	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk........ 79 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+++ XP_021276924.1 46 LPAGVKFDPTDQELI-EHLEAKVEAKDMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdlqgg 138 799**********.99*****5553344444434666646******.555666799**************73334555544 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_021276924.1 139 ETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 188 778********.999*******5547999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence
MNKNNLGSVS SSDLIDAKLE EHQLCGSKQC PGCGHKLEGK PDWLGLPAGV KFDPTDQELI 60 EHLEAKVEAK DMKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT 120 TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN 180 WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRSA TTVEGSNDPN SRRDSGSGSC 240 SSKEVILHRD EVSGAGVAAA LSSYAGAMDI QQLKSDHFSF TPFRKSFDEV GIGEASAARE 300 APTQGTCEEI REHPRPHHMA HDHQHQQQQQ QHHHTHHQLA TTAFHISRPS HPISTIISPP 360 PLHHTSIILD EDSFHVSRIM LQNESFQQQH QQQQQQQHHK LGGRSATGLE ELIMGCTSTD 420 IKEESSITNP QEAEWLKYSS FWPDPDNQDH HG

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence

MNKNNLGSVS SSDLIDAKLE EHQLCGSKQC PGCGHKLEGK PDWLGLPAGV KFDPTDQELI  60
EHLEAKVEAK DMKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN  180
WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRSA TTVEGSNDPN SRRDSGSGSC  240
SSKEVILHRD EVSGAGVAAA LSSYAGAMDI QQLKSDHFSF TPFRKSFDEV GIGEASAARE  300
APTQGTCEEI REHPRPHHMA HDHQHQQQQQ QHHHTHHQLA TTAFHISRPS HPISTIISPP  360
PLHHTSIILD EDSFHVSRIM LQNESFQQQH QQQQQQQHHK LGGRSATGLE ELIMGCTSTD  420
IKEESSITNP QEAEWLKYSS FWPDPDNQDH HG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-146	NAC family protein