PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276916.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 399aa MW: 44562.3 Da PI: 7.6584

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276916.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.3e-18	63	110	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++ +G+g+W+t ++ g+ R++k+c++rw +yl XP_021276916.1 63 KGPWTPEEDLKLTNYIQIHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 110 79********************************************97 PP
2	Myb_DNA-binding	54.3	3.1e-17	116	160	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_021276916.1 116 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 160 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 399 aa Download sequence
MEVIVPLGST SYTFSQLVFQ ASSHPSLTPS RKLHYHRLHL CISLFQGKSM GRTPCCDKNG 60 LKKGPWTPEE DLKLTNYIQI HGPGNWRTLP KNAGLQRCGK SCRLRWTNYL RPDIKRGRFS 120 FEEEETIIQL HSILGNKWSA IAARLPGRTD NEIKNYWNTH IRKRLLRNGI DPVTHAPRLD 180 FLDLSSILSS TLCNQSLLNV SSLLGTQALL NPELLRLANT LLSLKQENPE ILLQYLQQNQ 240 LCNSQQNLVP SLQPSQLQAP IQNASTCTTS NVPCTSTLSQ MQANGEGFCS NMTNFSYPNS 300 QESLTSSTLN NAFVSQPIYV QCSPNSTVPL LSENSNFQSL DGSQNFNFDS VSPTPISSPT 360 PLNSSSTFIN SVSTDDERES FSSLLKFEIP ESLDINDFM

Sequence ? help Back to Top

Protein Sequence Length: 399 aa Download sequence

MEVIVPLGST SYTFSQLVFQ ASSHPSLTPS RKLHYHRLHL CISLFQGKSM GRTPCCDKNG  60
LKKGPWTPEE DLKLTNYIQI HGPGNWRTLP KNAGLQRCGK SCRLRWTNYL RPDIKRGRFS  120
FEEEETIIQL HSILGNKWSA IAARLPGRTD NEIKNYWNTH IRKRLLRNGI DPVTHAPRLD  180
FLDLSSILSS TLCNQSLLNV SSLLGTQALL NPELLRLANT LLSLKQENPE ILLQYLQQNQ  240
LCNSQQNLVP SLQPSQLQAP IQNASTCTTS NVPCTSTLSQ MQANGEGFCS NMTNFSYPNS  300
QESLTSSTLN NAFVSQPIYV QCSPNSTVPL LSENSNFQSL DGSQNFNFDS VSPTPISSPT  360
PLNSSSTFIN SVSTDDERES FSSLLKFEIP ESLDINDFM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G05100.1	3e-90	MYB family protein