PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276809.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 313aa    MW: 34224.5 Da    PI: 9.1346
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.34.9e-19177210134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk +
  XP_021276809.1 177 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 210
                     *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    
MTPVYLNLPP LPFPLVELKE EQHLQLFLSP QQAASSLSAS TFLNSNTASH QDQTVTKPEE  60
SKPHDHKGNQ FMTHEGSIDQ QASSSSSLQS TVDQSTANGH NLSFSRKEDG DCESASDNGS  120
SVKWMSSKVR LMKKMMNSNC SGADDKPPKF THRFQYPVHD SDETISFSKA NNTVRVCSDC  180
NTTTTPLWRS GPRGPKSLCN ACGIRQRKAR RAMEAAAAAA AAAANGATAA ADASSMKIKV  240
QIHKEKKSRT SHVAQCKKQF KPPYYSPQSQ KKLCFKEFAL SLSKNSALQR VFPQDVEDAA  300
ILLMELSCGL VHS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-20GATA family protein