PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276754.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 316aa MW: 34534.7 Da PI: 6.2425

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+++v+ +G+g +W + +++ g++R++k+c++rw++yl XP_021276754.1 14 RGPWSPEEDATLKNYVETHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	46.5	8.3e-15	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + q+G++ W++Ia+ ++ gRt++++k++w++ XP_021276754.1 69 GGFTEEEDNIICSLYSQMGSR-WSLIASQLP-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MGRAPCCDKA NVKRGPWSPE EDATLKNYVE THGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIC SLYSQMGSRW SLIASQLPGR TDNDVKNYWN TKLKKKLVAG 120 KSCFNISKTI NNDLVPAANS NISTQPGSAA ALQPCLPKAE PYNLDYPTSH SHISAPLPIL 180 SDVGYGFSIS SIQNLPLNPV VDFSRPEAVT HLSQSGATME NSLIVTSSQE GSSISDSTSL 240 AMESKPVSMP ANGYVDDTGN ILMDQFSYEF PYEFVNGIWS QEKAGEVVPS CYDSLADFSH 300 ADIKPQGLNQ SVANRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	3e-76	MYB family protein