PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276713.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 278aa    MW: 31005.7 Da    PI: 9.735
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-151460147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+WT+ Ed ll +++k +G g+W++ +++ g+ R++k+c++rw +y
   XP_021276713.1 14 RGPWTATEDTLLTNYIKSHGEGHWRSLPKKAGLLRCGKSCRLRWMNY 60
                     89******************************99************9 PP
2Myb_DNA-binding55.21.6e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++Ed+l+++++ +lG++ W++Ia++++ gRt++++k++w+++l
   XP_021276713.1  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAKRLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MGRAPCCTKV GLKRGPWTAT EDTLLTNYIK SHGEGHWRSL PKKAGLLRCG KSCRLRWMNY  60
IRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAKRLPGRT DNEIKNYWNS HLSKRVKKSE  120
TNSNSKEASR SSRKANKTSE KKQKNKDKQE SANRTATATV HQPKASRVSP FSVLTRSSGF  180
DSMISGPSSC GEGSKSGANS DTDVFDFPPY WPDGNAGAAT YSGKAMVYDE NQQEFPYGFD  240
AGVGDANMLD DIFQEYQKLL VVDHDPGERN SFADPLLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.11e-67MYB family protein