PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276691.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 256aa    MW: 27814.4 Da    PI: 10.9139
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.34e-14103147347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_021276691.1 103 PWTEEEHRIFLLGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 147
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    
MGRKCSHCGN IGHNSRTCTT YRGTAVGGLR LFGVQLDISS SSVAMKKSFS MDCLSSASPS  60
SPSPSSSLSS SRVSIDENSD KTSIGYLSDG LMGRSPERKK GVPWTEEEHR IFLLGLEKLG  120
KGDWRGISRN FVTTRTPTQV ASHAQKYFLR QATLNKKKRR SSLFDMVRSS SMAGPHANSS  180
NSKPAHIIPQ LSLHRHAMSA NLQHGFSDSQ TTTSNAAQSI SRNVAPDLEL TLAAPRPLEE  240
NKSSPRTLLI RPISVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156160KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-58MYB_related family protein