PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276616.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HB-other

Protein Properties

Length: 444aa MW: 50723.5 Da PI: 8.8802

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276616.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	2.9e-09	262	308	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++k q+e+Le+++++++ p+ +++ + + ++L+ ++V WF +R XP_021276616.1 262 RLKKVQVETLEKVYRRSKRPTNAMISSIVQVTNLPRKKVVKWFEDKR 308 57899***************************************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence
MASALSVKSS MALRLFPFFF GSGRVFITQP RPFDVLLPRQ SPRPSILAFS RRRSNTPSTT 60 SSVKKKKVKK EKKELVDEDD FDGDPFEALF SQLEEDLKND NSDMEDDDDY DEIKEEDVDR 120 LASELAEALG DFDLEAFTST PDDAEEEEEE ERPVKLKNWQ LRRLAAAVKV GRRKTSIKSL 180 ATELCLDRHV VLELLREPPP ELLMLSATLP DEPVKREPVL ETKPVETVAL ETTVGSVKHE 240 PKEPKVKEPV HVMQHRWSAQ KRLKKVQVET LEKVYRRSKR PTNAMISSIV QVTNLPRKKV 300 VKWFEDKRNE DGIPEHHQPY QSLKQQRFCX SYCTTSNRVE KNMATLQRSA VSFRREGSSG 360 LVWDDLYVLG EDGTVHYRDQ LRPCQSTRAR SSSTTVPNAC PRSMSTPAMD PSSLVKVFGK 420 LSREDKPFPE VPKLPKSKSK KHKA

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence

MASALSVKSS MALRLFPFFF GSGRVFITQP RPFDVLLPRQ SPRPSILAFS RRRSNTPSTT  60
SSVKKKKVKK EKKELVDEDD FDGDPFEALF SQLEEDLKND NSDMEDDDDY DEIKEEDVDR  120
LASELAEALG DFDLEAFTST PDDAEEEEEE ERPVKLKNWQ LRRLAAAVKV GRRKTSIKSL  180
ATELCLDRHV VLELLREPPP ELLMLSATLP DEPVKREPVL ETKPVETVAL ETTVGSVKHE  240
PKEPKVKEPV HVMQHRWSAQ KRLKKVQVET LEKVYRRSKR PTNAMISSIV QVTNLPRKKV  300
VKWFEDKRNE DGIPEHHQPY QSLKQQRFCX SYCTTSNRVE KNMATLQRSA VSFRREGSSG  360
LVWDDLYVLG EDGTVHYRDQ LRPCQSTRAR SSSTTVPNAC PRSMSTPAMD PSSLVKVFGK  420
LSREDKPFPE VPKLPKSKSK KHKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	67	RRRSNTPSTTSSVKKKK
2	261	302	KRLKKVQVETLEKVYRRSKRPTNAMISSIVQVTNLPRKKVVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11270.1	7e-54	HB-other family protein