PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276539.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HB-PHD

Protein Properties

Length: 765aa MW: 86462.3 Da PI: 9.9813

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.1	9.7e-11	540	584	9	53
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ +e L ++F++n ps+ +e L+k+lgL+ ++V WF+N R+ XP_021276539.1 540 PTAVEKLRQVFAENELPSRVIKENLSKELGLEPEKVNKWFKNARY 584 67899**************************************97 PP
2	PHD	40.1	8.1e-14	275	330	1	51
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + ++++vlCd +C+++fH+kCl+++l++e++p g w+C+ C++k XP_021276539.1 275 FCAKCKLheAFPDNDIVLCDgTCNRAFHQKCLDPPLDTENIPPGdqGWFCKFCDCK 330 699999854445******56****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 765 aa Download sequence
MYVCVEINLI KILKPSLPLY AEQRTVATSF SFDTTEISMR GIGKKVDDHG SAKSSSSKKE 60 AGSKLIATLQ FKKRSKLSHG RVRKPKYHVK KVGSTLLKKK VNASISKGTG NDVSSGKMVG 120 SKTNLHKANK KGSSKELDSS KLQGKNAASG SSEENSKKAN EDVRVKNLTK KKKKRQKDKV 180 ELDEALRLQR RTRYLLIKMK LEQNLIDAYS GEGWKGQSRE KIRPEKELQR AKKQILKCKL 240 GIREAIRQLD SLSSVGSIEG SVIAPDGSVY HEHIFCAKCK LHEAFPDNDI VLCDGTCNRA 300 FHQKCLDPPL DTENIPPGDQ GWFCKFCDCK MEIIEAMNAH IGTHFSVDSH WQDIFKDEAA 360 FPDGAIASLN PEEEWPSDDS EDDDYDPERK ENSCGVSGAA TDGDDTDDTD SSTSLSWSVD 420 GEDFSGSGRQ ENHSVDSGVD SYETSDGEII SGRRRRRAVD YKKLYDEMFG KDAPPYEQVS 480 EDEDWGPGKR KRREKESDAA STLMTLYESE TKYPNVETTE TRRQLPSDLK SRRPIFRIPP 540 TAVEKLRQVF AENELPSRVI KENLSKELGL EPEKVNKWFK NARYLALKSR KVERADHLQS 600 SSPRVSKESE LEAPKRKDPD ILQLEDTSKK PLLHTPKRLK KKVRKSPNSK SLHSPLKRSP 660 RDGLSLVSPA NSNKVRKELS DDVILKKLLK GKKKREKKRV NIAVGGGLQQ FELEMERLCR 720 VKVRLENMRQ TLLRLETSKA RKVNKNRLHE ESVIYIPIAE VKQKV

Sequence ? help Back to Top

Protein Sequence Length: 765 aa Download sequence

MYVCVEINLI KILKPSLPLY AEQRTVATSF SFDTTEISMR GIGKKVDDHG SAKSSSSKKE  60
AGSKLIATLQ FKKRSKLSHG RVRKPKYHVK KVGSTLLKKK VNASISKGTG NDVSSGKMVG  120
SKTNLHKANK KGSSKELDSS KLQGKNAASG SSEENSKKAN EDVRVKNLTK KKKKRQKDKV  180
ELDEALRLQR RTRYLLIKMK LEQNLIDAYS GEGWKGQSRE KIRPEKELQR AKKQILKCKL  240
GIREAIRQLD SLSSVGSIEG SVIAPDGSVY HEHIFCAKCK LHEAFPDNDI VLCDGTCNRA  300
FHQKCLDPPL DTENIPPGDQ GWFCKFCDCK MEIIEAMNAH IGTHFSVDSH WQDIFKDEAA  360
FPDGAIASLN PEEEWPSDDS EDDDYDPERK ENSCGVSGAA TDGDDTDDTD SSTSLSWSVD  420
GEDFSGSGRQ ENHSVDSGVD SYETSDGEII SGRRRRRAVD YKKLYDEMFG KDAPPYEQVS  480
EDEDWGPGKR KRREKESDAA STLMTLYESE TKYPNVETTE TRRQLPSDLK SRRPIFRIPP  540
TAVEKLRQVF AENELPSRVI KENLSKELGL EPEKVNKWFK NARYLALKSR KVERADHLQS  600
SSPRVSKESE LEAPKRKDPD ILQLEDTSKK PLLHTPKRLK KKVRKSPNSK SLHSPLKRSP  660
RDGLSLVSPA NSNKVRKELS DDVILKKLLK GKKKREKKRV NIAVGGGLQQ FELEMERLCR  720
VKVRLENMRQ TLLRLETSKA RKVNKNRLHE ESVIYIPIAE VKQKV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	200	KKKKKRQKDKVELDEALRLQRRTRYLLIKMK
2	171	201	KKKKKRQKDKVELDEALRLQRRTRYLLIKMK
3	172	202	KKKKKRQKDKVELDEALRLQRRTRYLLIKMK
4	490	495	RKRREK
5	629	645	KKPLLHTPKRLKKKVRK
6	637	645	KRLKKKVRK
7	638	644	RLKKKVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.2	1e-170	HB-PHD family protein