PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276530.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 594aa MW: 67747.4 Da PI: 6.8149

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276530.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.3	1.4e-30	423	507	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev aLi++r + e+++r+ lk+plWeevs++m++ g++rs+k+Ckekwen+nk+++k ke+ k r +++s+tc yfdql+ XP_021276530.1 423 RWPRAEVEALIQVRCNFESKFREPGLKGPLWEEVSSFMASLGYQRSAKRCKEKWENINKYFRKSKENGKMR-PQQSKTCTYFDQLD 507 8***************************************************************99987.9999*******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 594 aa Download sequence
MHPVKYGAHH LQQQQLMDDD GSSSGVFSIS NPPQYHHQQS PFHPNYPQHS QQQQKQQQNL 60 FQQHSSVPVT HQLFQHHQFQ PFEQQAEPAH HHHVHQQPFL AVNFKLGLNE NSGKKEAALA 120 LNHQPNVATF FDGNEQHVHE NRRPQQHSLL MPHCWHPQED SPIKEPFWKP LNRCEDRQCS 180 GDGARGIEGN KYDKVLQQPG QCTSERSKNL DNKYRLFGEL EAIYGLVKGG ETTQAGSGSA 240 LTGENSPTNV GLSMPLSEFQ AHNVGANCGG GNVAHGVDHG SETSIGEEAS IRKIEKKKRK 300 RKMKEQLSSM IGFFECLVKQ VTDHQEGLHK RFLEVIERMD KERTMKEESW RRQEAEKRHR 360 EAFARAHEQD QATSREALIV SYLEKITGQS ISLPARTPLL LQPESAIEPF KESMPVKVDN 420 SSRWPRAEVE ALIQVRCNFE SKFREPGLKG PLWEEVSSFM ASLGYQRSAK RCKEKWENIN 480 KYFRKSKENG KMRPQQSKTC TYFDQLDQLY SRIPVTCPTS PRPLINQDIE MQEHGDSDFL 540 EAYMPEGDLE TAQDNARGSL KVSEINSQLD FDGAVDENVI VQGCNGKDNE SHEN

Sequence ? help Back to Top

Protein Sequence Length: 594 aa Download sequence

MHPVKYGAHH LQQQQLMDDD GSSSGVFSIS NPPQYHHQQS PFHPNYPQHS QQQQKQQQNL  60
FQQHSSVPVT HQLFQHHQFQ PFEQQAEPAH HHHVHQQPFL AVNFKLGLNE NSGKKEAALA  120
LNHQPNVATF FDGNEQHVHE NRRPQQHSLL MPHCWHPQED SPIKEPFWKP LNRCEDRQCS  180
GDGARGIEGN KYDKVLQQPG QCTSERSKNL DNKYRLFGEL EAIYGLVKGG ETTQAGSGSA  240
LTGENSPTNV GLSMPLSEFQ AHNVGANCGG GNVAHGVDHG SETSIGEEAS IRKIEKKKRK  300
RKMKEQLSSM IGFFECLVKQ VTDHQEGLHK RFLEVIERMD KERTMKEESW RRQEAEKRHR  360
EAFARAHEQD QATSREALIV SYLEKITGQS ISLPARTPLL LQPESAIEPF KESMPVKVDN  420
SSRWPRAEVE ALIQVRCNFE SKFREPGLKG PLWEEVSSFM ASLGYQRSAK RCKEKWENIN  480
KYFRKSKENG KMRPQQSKTC TYFDQLDQLY SRIPVTCPTS PRPLINQDIE MQEHGDSDFL  540
EAYMPEGDLE TAQDNARGSL KVSEINSQLD FDGAVDENVI VQGCNGKDNE SHEN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	296	302	KKKRKRK
2	296	303	KKKRKRKM
3	297	302	KKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-51	Trihelix family protein