PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276420.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HSF
Protein Properties Length: 340aa    MW: 38151.1 Da    PI: 5.299
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276420.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.1e-36131052103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     F+ k+y++++d+++++li w + +nsf+v+d+ +f++++Lp yFkhsnf+SFvRQLn+YgF+kv+ ++         weF++++F +g+k+ll++
  XP_021276420.1  13 FVVKTYQMVNDPTTDTLIAWGKANNSFIVMDPLDFSQRILPAYFKHSNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQKHLLKN 98 
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i r+k++
  XP_021276420.1  99 IVRRKQN 105
                     ***9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MESNSNNSIV APFVVKTYQM VNDPTTDTLI AWGKANNSFI VMDPLDFSQR ILPAYFKHSN  60
FSSFVRQLNT YGFRKVDPDK WEFANEWFLR GQKHLLKNIV RRKQNKSPYM QMKAEDLDDE  120
QIVMEIASLK EEQKSLEEEL QGMNKRLEAT ERRPQQMMAF LYKVVEDPDL LPRMMLEKER  180
TRQLNAEKKR RLTIMPSSYS SSSSLAVSNN SVKSEDEEEV NPGVISSPET GFDVDNNFCR  240
SSYQSSPSPE DSRELLLGHR PITGQVMTYG CATVTSQMPA VVLAPSVIKN GTSVSSPGTS  300
SLGGYGDING QLGYFGEMAA AGMEARPPPP YPFSLFGGGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.13e-89HSF family protein