PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276371.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family Trihelix
Protein Properties Length: 349aa    MW: 41483.5 Da    PI: 4.407
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.73e-13104188286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt+qe+ +L+ea  ++  +l+r++l++ +W +v++k+  + + e++  qC+  ++ l++++kk+k  +++    +ss++++f+++e
  XP_021276371.1 104 WTQQEIYVLLEAWGDRFLQLGRRSLRGEDWVDVAEKVsDALKSEKNEGQCRRMIDGLKRKFKKEKLKAERM-GLNSSKWVFFRKME 188
                     *************************************778999**********************999985.89999********8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MDDIEDDSRC PTKPYSFNRL KHPQYPRSIR TRHVYNYRPE EEDGEEENDD VEDDNDDDPD  60
VYYRRFKESE RFERYPKRQK LRTSAHSYQF AADHRDSFTN AYDWTQQEIY VLLEAWGDRF  120
LQLGRRSLRG EDWVDVAEKV SDALKSEKNE GQCRRMIDGL KRKFKKEKLK AERMGLNSSK  180
WVFFRKMEML MGLGSSFRQP ESGLACGVDS GEFVFMNTQV YLDRSNGFDE MRDSPAESEM  240
MEDDEEEEDG RSRMRMEGND EHSMRMLADS VQRFGKIYEK IESSKGEHMK ELEKMRMDFQ  300
KELEVQKKQI LERAQAEIAK IKEEDDADDE EESDDDDEDN DNSTENISE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-89Trihelix family protein