PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276339.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 349aa MW: 39011.5 Da PI: 7.2666

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276339.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.5	4e-07	89	113	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C f+ GtC+ G+ C+FaHg XP_021276339.1 89 FKTRMCAKFRL-GTCRNGEGCNFAHG 113 69*******.***********8 PP
2	zf-CCCH	28.4	2.9e-09	150	172	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + +C+yGdrC+F H XP_021276339.1 150 MKLCKKFYNGEECPYGDRCNFLH 172 689****66********** PP
3	zf-CCCH	38.4	2e-12	232	257	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC + tG+C++G++C+FaHg XP_021276339.1 232 WKTKLCTKWETTGHCPFGEKCHFAHG 257 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MNTSYPESCS SFMRLPQSTY AGSDAIGIWP EFAMNDGQFD PHSEFEQQPP FKRPRHSEDS 60 QSNVVHCLPT NSRMPLNPPV NKGTSNIFFK TRMCAKFRLG TCRNGEGCNF AHGIEDLRQP 120 PPNWQELVGG RDEERPSGNW DDDQKIIHRM KLCKKFYNGE ECPYGDRCNF LHEDPSKFRD 180 DMGRFRESSA ISIGTMGPPG GHGTASDQSE GNRPLNSTTS DAFRGNMKPV YWKTKLCTKW 240 ETTGHCPFGE KCHFAHGHSE LQGIGGRVDG DFGNTCSGLT RTGSISTKVH NLPANDAPSV 300 TASVPSLNEE AQAKKCLFKW KGPRKINRIY GDWLDDLPLV QNMPSQVES

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MNTSYPESCS SFMRLPQSTY AGSDAIGIWP EFAMNDGQFD PHSEFEQQPP FKRPRHSEDS  60
QSNVVHCLPT NSRMPLNPPV NKGTSNIFFK TRMCAKFRLG TCRNGEGCNF AHGIEDLRQP  120
PPNWQELVGG RDEERPSGNW DDDQKIIHRM KLCKKFYNGE ECPYGDRCNF LHEDPSKFRD  180
DMGRFRESSA ISIGTMGPPG GHGTASDQSE GNRPLNSTTS DAFRGNMKPV YWKTKLCTKW  240
ETTGHCPFGE KCHFAHGHSE LQGIGGRVDG DFGNTCSGLT RTGSISTKVH NLPANDAPSV  300
TASVPSLNEE AQAKKCLFKW KGPRKINRIY GDWLDDLPLV QNMPSQVES

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-107	C3H family protein