PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276319.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 352aa MW: 40455.2 Da PI: 5.1381

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276319.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	36.1	1.7e-11	25	100	2	78
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 W q+ l L++ +e++ +++ + ++W+ + +++ + g+ s++qC+ kw+ l ++y kik++e++ + s XP_021276319.1 25 WVAQHLLILVNEIAAIETDCSNALSSFQKWKIIVENCNALGVPHSSNQCRRKWNLLLQDYTKIKRWESQS-ALFDSY 100 99*****************************************************************984.454445 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MEHKDDNPSR SSGIRRTRSQ ASAHWVAQHL LILVNEIAAI ETDCSNALSS FQKWKIIVEN 60 CNALGVPHSS NQCRRKWNLL LQDYTKIKRW ESQSALFDSY WSLGXSKEKR IELPENFDKN 120 LFKAINDVVR LQEEKSGTDE TGDPEARXDD MVEITAELIC LLLCLQSPSI LLVDCVKFNF 180 YTGEASNMWH FYYLVLSGPR KQRRKLIPLR SPAEAKSQKR CAVEKPKKIN VVEQPQESCA 240 EEKLQRSEAE EGTWRIEAGE NREKSYMDIK HMFSVEEEEQ VMVARLCAKA EQIHAVIEEN 300 FTENADHSAA DVKNVEDFQT DFIRRQGDKL VACLGDILST LNQFSELVQE CE

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MEHKDDNPSR SSGIRRTRSQ ASAHWVAQHL LILVNEIAAI ETDCSNALSS FQKWKIIVEN  60
CNALGVPHSS NQCRRKWNLL LQDYTKIKRW ESQSALFDSY WSLGXSKEKR IELPENFDKN  120
LFKAINDVVR LQEEKSGTDE TGDPEARXDD MVEITAELIC LLLCLQSPSI LLVDCVKFNF  180
YTGEASNMWH FYYLVLSGPR KQRRKLIPLR SPAEAKSQKR CAVEKPKKIN VVEQPQESCA  240
EEKLQRSEAE EGTWRIEAGE NREKSYMDIK HMFSVEEEEQ VMVARLCAKA EQIHAVIEEN  300
FTENADHSAA DVKNVEDFQT DFIRRQGDKL VACLGDILST LNQFSELVQE CE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	8e-65	Trihelix family protein