PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276267.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 363aa    MW: 39883.2 Da    PI: 6.2254
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17252286135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  XP_021276267.1 252 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 286
                     99*****************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MEAPEFYQGG SYCSQFTPEK PAAGDHFIVE DLLDFSNEDA VITDGTFDSS VAGGHSTDSS  60
TVTAVDSCNS SSFSGCEPNF ASDMGCRGFT DGQFAGDLCV PYDDLAELEW LSNFVEESFS  120
SEDLQKLQLI SGMKTRPDES SESGGFQPVL TNQMHNVIHN GDTEQGNNNN NPIFHPDMSV  180
PAKARSKRSR AAPCNWASRL LVLSPTTSSS EPDIVVPVQP TPANQPGKKP VKTKKKDGGE  240
GGGLANSDGR KCLHCATDKT PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL  300
TKHSNSHRKV LELRRQKEML RAQHQHQQQF MQQHHHQNMV FDVPNGDDYL THQHVGPEFR  360
QLI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-84GATA family protein