PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276251.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HRT-like

Protein Properties

Length: 589aa MW: 64889.4 Da PI: 9.6716

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276251.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	57.2	2.8e-18	264	293	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCGv l dGs+C+r+Pv+gRKRC+eHKG++ XP_021276251.1 264 ICGVVLVDGSICRRPPVEGRKRCAEHKGKK 293 8***************************98 PP
2	HRT-like	51.5	1.7e-16	354	384	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+++dGs C+rqP gRKRC eHKG++i XP_021276251.1 354 ICGVAMDDGSLCTRQPGSGRKRCDEHKGRKI 384 8***************************997 PP
3	HRT-like	52.5	8.3e-17	443	471	1	29
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGm 29 iCGv l++G +C++qPv+gR RCeeHKG XP_021276251.1 443 ICGVELGNGYFCTKQPVRGRVRCEEHKGL 471 8***************************5 PP

Sequence ? help Back to Top
Protein Sequence Length: 589 aa Download sequence
MPMGATELAA VVTRWKREDH KRTKHDSQFS KWKVLIGPDD WVDYSVGKEG VARYRVENLP 60 KNSSSGLYEL AIYRSGSSSR ENTGKLDRDK VLVVYLGEAD NVRTRLQQYG RTGAHLGRSS 120 SGEKGCGRFE DIFSRGYSIV YRWAPMENKA NAQRTEAQLL NSFDYAWNKG SNGARRHDDI 180 LQKLDKGASN CAPPAIFSRK LLPFSQKQVG IKIKASKLLS QDSEFSKHSD GEGFNFLWQV 240 FKFSRSQPRL VFDRGGSNEN DTIICGVVLV DGSICRRPPV EGRKRCAEHK GKKTRGSSVS 300 LSKSEKSQMH KACSGYVIFG NGEYNVNGSK IPSFGTVPSL IAGDCPAIEH CSPICGVAMD 360 DGSLCTRQPG SGRKRCDEHK GRKICNSNSE TTRYQTVPYV VSHSYANDAS GFDKKSSETF 420 MRGKVETGVA PHRPVVNDGC DTICGVELGN GYFCTKQPVR GRVRCEEHKG LSVASQLSGF 480 DAKSTSHDFD MDPRFNSYNW KYGSSSSSTT ICGAPTRNGS SCQRTVNGNA RCWQHSNYGS 540 SSSSSISSSN FSTKYSTYGD SSKSICGAPT RNGSFCQRKV KGNGRCWQH

Sequence ? help Back to Top

Protein Sequence Length: 589 aa Download sequence

MPMGATELAA VVTRWKREDH KRTKHDSQFS KWKVLIGPDD WVDYSVGKEG VARYRVENLP  60
KNSSSGLYEL AIYRSGSSSR ENTGKLDRDK VLVVYLGEAD NVRTRLQQYG RTGAHLGRSS  120
SGEKGCGRFE DIFSRGYSIV YRWAPMENKA NAQRTEAQLL NSFDYAWNKG SNGARRHDDI  180
LQKLDKGASN CAPPAIFSRK LLPFSQKQVG IKIKASKLLS QDSEFSKHSD GEGFNFLWQV  240
FKFSRSQPRL VFDRGGSNEN DTIICGVVLV DGSICRRPPV EGRKRCAEHK GKKTRGSSVS  300
LSKSEKSQMH KACSGYVIFG NGEYNVNGSK IPSFGTVPSL IAGDCPAIEH CSPICGVAMD  360
DGSLCTRQPG SGRKRCDEHK GRKICNSNSE TTRYQTVPYV VSHSYANDAS GFDKKSSETF  420
MRGKVETGVA PHRPVVNDGC DTICGVELGN GYFCTKQPVR GRVRCEEHKG LSVASQLSGF  480
DAKSTSHDFD MDPRFNSYNW KYGSSSSSTT ICGAPTRNGS SCQRTVNGNA RCWQHSNYGS  540
SSSSSISSSN FSTKYSTYGD SSKSICGAPT RNGSFCQRKV KGNGRCWQH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	1e-103	HRT-like family protein