PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276078.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CPP

Protein Properties

Length: 628aa MW: 68519.7 Da PI: 8.1627

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.5	1.5e-14	158	197	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfaag +C+ C+C +C+N+ e+ XP_021276078.1 158 KQKQCNCKNSRCLKLYCECFAAGIYCNG-CNCINCHNNVEN 197 89************************.******9875 PP
2	TCR	49.4	9.3e-16	242	281	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeC++a+ Cse+CkC dCkN e XP_021276078.1 242 KHNKGCHCKKSGCLKKYCECYQANILCSENCKCMDCKNFE 281 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MEQGETVSDF APKKLARQLD FTTMCRASAN ATLPDHPMHL QSQSQSQPQP QWPSQTPLQT 60 KHQQQPQPQE LQLRLYFQPQ TVQSPPQPQL KPQSPPMPQV QTRPPPPPPQ QRQQVAAVHR 120 VPHPVQKVPL PTFQLSKQES PRSRPRGHLD GKDGTPKKQK QCNCKNSRCL KLYCECFAAG 180 IYCNGCNCIN CHNNVENEAA RQEAVGATLE RNPNAFRPKI ASSPHRPQDA RDDARDVQMV 240 GKHNKGCHCK KSGCLKKYCE CYQANILCSE NCKCMDCKNF EGSEERRALF HGDHNSMAYM 300 QQAANAAISG AIGSSGYGTP LASKKRKSEE FLFGVAVKDQ STQKIVQHQQ ENHLRNPVAS 360 SFPFSAPVSR TANTASVGSS KLTYRSPLAD ILQPQVVKEL CSVLVLVSSE AGRALAAEKS 420 SKMDSQAEKG SIETIVSSGQ AGEMSQQGNG VHSGAPNDRT SENQADADRS GNSGADGDDV 480 QNGRPLSPGT RALMCDEEDA MFMAAGSSNV LADRSQNMTQ KSSDENECTD VYAEQERLVL 540 TRFRDFLNQL ITCGSIKETM CSPLAISEKR SQQQPVENGT VKSGNQAGGQ KEPYRNGIVQ 600 SSIPAPVEIG QTVSAACSAL NTDLPSKH

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MEQGETVSDF APKKLARQLD FTTMCRASAN ATLPDHPMHL QSQSQSQPQP QWPSQTPLQT  60
KHQQQPQPQE LQLRLYFQPQ TVQSPPQPQL KPQSPPMPQV QTRPPPPPPQ QRQQVAAVHR  120
VPHPVQKVPL PTFQLSKQES PRSRPRGHLD GKDGTPKKQK QCNCKNSRCL KLYCECFAAG  180
IYCNGCNCIN CHNNVENEAA RQEAVGATLE RNPNAFRPKI ASSPHRPQDA RDDARDVQMV  240
GKHNKGCHCK KSGCLKKYCE CYQANILCSE NCKCMDCKNF EGSEERRALF HGDHNSMAYM  300
QQAANAAISG AIGSSGYGTP LASKKRKSEE FLFGVAVKDQ STQKIVQHQQ ENHLRNPVAS  360
SFPFSAPVSR TANTASVGSS KLTYRSPLAD ILQPQVVKEL CSVLVLVSSE AGRALAAEKS  420
SKMDSQAEKG SIETIVSSGQ AGEMSQQGNG VHSGAPNDRT SENQADADRS GNSGADGDDV  480
QNGRPLSPGT RALMCDEEDA MFMAAGSSNV LADRSQNMTQ KSSDENECTD VYAEQERLVL  540
TRFRDFLNQL ITCGSIKETM CSPLAISEKR SQQQPVENGT VKSGNQAGGQ KEPYRNGIVQ  600
SSIPAPVEIG QTVSAACSAL NTDLPSKH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-134	CPP family protein