PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021276035.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family CO-like
Protein Properties Length: 335aa    MW: 36909.2 Da    PI: 6.7712
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021276035.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box292.3e-09446440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                    + C+ +++  ++ fC+ ++ +lC +C +++H        H++v
  XP_021276035.1  4 KLCDSCKSATATVFCRADSAFLCSNCDSKIHAAnklasrHSRV 46
                    68*****************************656777788776 PP
2zf-B_box27.28.3e-094691342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      +C+ +e+ +++  C+ +   lC +C   +H+       H++vp+
  XP_021276035.1 46 VLVCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplarrHERVPV 91
                    579*****************************66899999*99986 PP
3CCT69.49.4e-24272315144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++
  XP_021276035.1 272 REARVLRYREKRKNRKFEKTIRYASRKAYAEMRPRIKGRFAKRT 315
                     9*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    
MASKLCDSCK SATATVFCRA DSAFLCSNCD SKIHAANKLA SRHSRVLVCE VCEQAPAHVT  60
CKADAAALCV TCDRDIHSAN PLARRHERVP VTPFCDSVNS VPAVKPNGVV NFLDERYFSD  120
VDGDADVSRE EAEAASWLLP NPNHKAVESP DVNTGQYVFS EMDPYLDLDY GHVDPKMEAQ  180
EQNSSGTDGV VPVQSKSVQA PMVNDHCFDL DFTGSKPFAY GYNAHCHSHS VSSSSLDVGV  240
VPDGSAITDI SNPYGRGAES THQTVQLSSA DREARVLRYR EKRKNRKFEK TIRYASRKAY  300
AEMRPRIKGR FAKRTDIEVE ADRRNMYGFG VVPSF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-150CO-like family protein