PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275979.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family AP2
Protein Properties Length: 551aa    MW: 59751.7 Da    PI: 6.9311
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275979.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.3e-15185244155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  XP_021275979.1 185 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 244
                     57*******************666664477446*************************98 PP
2AP247.15.9e-15287338155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_021275979.1 287 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 338
                     57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    
MDMSMGNMDS SSTQNWLAFS LSNQQQQHLN LPSSSSSSHH SSHLCLFEAF TTPTPAAPTL  60
TINSSAREED AAATGTTTAG ATDLSMFRGG PKLEDFLGGS STTTGAGGAP HPHFSAETSV  120
TVSDTEIYDS ELKTIAASFL RGFSSEQTDT HKQQQQQQQQ QQQQLVPTTE PAXRRAVDTF  180
ANXSSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQV YLGGYDKEEK AARAYDLAAL  240
KYWGPTTTTN FPISNYEKEL EEMKNMTRQE FVASLRRKSS GFSRGASIYR GVTRHHQHGR  300
WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDMSRY DVKSIANSNL  360
PIGGLSNKSK NCSDSASDSK STDDDRDHSS ASSAVTFASQ PAPSSTLSFA VPIKQDPSDY  420
WSNIFGYNNT AASLSSAKNP SVAPTLFHQS SNNGSAFQDP SAFSMAFGVN SLVNESSNGL  480
FNGGGYVQQQ SGVSTSTSSL PLATPTALNN SGNNNYESSS GYGSWIAQSL HSYQTAKPSL  540
SVFQTPIFGM E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-144AP2 family protein