PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275935.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 356aa    MW: 38918.4 Da    PI: 7.0476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275935.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000472202581255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_021275935.1 220 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 258
                     6677889999999999998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
MNRAVLQSSP VQQMMAGNPN WWSINSMRPP THHQQPSPFL PPPPTFFPQY TPTSSSSSSS  60
SSSLPIPSWH DNQELPESWS QLLLGGLVGE EEKGGIGQFQ VQVPKKVENW EEQALHQASN  120
ASVVDVKQEN SASSYVYGHA NEDFHQATKP TWSHQIMPAS SPKSCVTSFS SNMLDFSGNK  180
ADARHPPPDR SSECNSTATG GTLKKARVQP SATQSTFKVR KEKLGDRITA LHQLVSPFGK  240
TDTASVLLEA IGYIRFLQSQ IEALSLPYLG SGSGNMRQQQ SVQGERNCIF PEDPGQLLND  300
NCMKRKGGPD QQDSHEEQKK DLRSRGLCLV PVSCTLQVGS DNGADFWAPA LGAGFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-97bHLH family protein