PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275919.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C3H
Protein Properties Length: 394aa    MW: 42913.2 Da    PI: 7.5013
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275919.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.49.7e-13327126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    yk e+Cr+f+r G C+yG+rCkF H+
  XP_021275919.1  3 YKKEPCRNFQR-GSCQYGERCKFLHV 27
                    9**********.*************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MHYKKEPCRN FQRGSCQYGE RCKFLHVIQQ QPKSNAFGFG TQAISHQQQK PNPFGFGVQN  60
NVQSKGASDF GNKQNQFKNT WTRSSASSAP SLRQPDNQPQ ATNHKCTDPE LCKRTIIEDF  120
EHERPLWKLT CYSHWKNSPC DIVGDVSFEE LRATAYDDAK HGLSLQSIVE RERNLLNSKL  180
VEFENLLRNP YTGPAGSTLA QQIPFPTATA TAFSPTAQNS GHSQNGFPLS VSSFSQLGAS  240
LNSGSAVRPS IQSNNAFGQP ISFSSSAQAS SVFATNSIPQ ANAFSFGNQQ PNQSVAASFT  300
TNMSSFSNSS VTGTALNQFS APAVSTQNLS SSSFQPSAVF NVSNLISKAD GQSTTDIQLG  360
NLQREIVSGD SSIWFIEKWI PGEIPEEAPP DAYV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-73C3H family protein