PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275764.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 1043aa MW: 114252 Da PI: 4.753

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275764.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.1	2.1e-18	39	85	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+++ g++Wk+Ia+++ Rt+ qc +rwqk+l XP_021275764.1 39 KGQWTAEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 85 799**************************9.**********986 PP
2	Myb_DNA-binding	65	1.4e-20	91	137	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEdel++++v+++G++ W+tIa++++ gR +kqc++rw+++l XP_021275764.1 91 KGPWSKEEDELIIELVNKFGPKKWSTIAQHLP-GRIGKQCRERWHNHL 137 79****************************.***********97 PP
3	Myb_DNA-binding	47.3	4.6e-15	143	185	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_021275764.1 143 KEAWTQEEELALIRAHQIFGNR-WAELTKFLP-GRTDNAIKNHWN 185 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1043 aa Download sequence
MEGDRTKSTP SVGLSISDGA QTMRALHGRT SGPTRRSTKG QWTAEEDEIL RKAVQRFKGK 60 NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE LIIELVNKFG PKKWSTIAQH 120 LPGRIGKQCR ERWHNHLNPA INKEAWTQEE ELALIRAHQI FGNRWAELTK FLPGRTDNAI 180 KNHWNSSVKK KLDSYVASGL LDQFQFPLLA NQSQPMPSSS SRVQSNVDDS GAKCRTEAED 240 ISECSQESSM IGCSKSASDM ANAAVNTREQ QFHLSEMPGV AKEKISSPAL CSEEYYPSLE 300 DVNFSIPEIS CEAGYSASGD YQFSLPNLPN ISSIELGQES SGLPTHCIDA SESHEVMNAA 360 FQTSVGLNAP TSFVNMVTTS DKPELMLITD DECCRVLFSE AVNDGCFASE NFTQGSNIVE 420 LGGCTSSSLC QASDIQISET GRTPASQSNC PSRSEVLATS CCQYFVSPSV ASVGYGTLMS 480 GREPSQLNGQ PFGPQEQEFT MNAHDGFIYT NDDHTDNTDL PEQLYLAKDS LKLVPVNSFG 540 SESDAMQTCA TVDDEPNLPE EQDVGALCYE PPRFPSLDIP FFSCDLIPSG SDMQQEYSPL 600 GIRQLMMSSM NCITPFRLWD SPSRDDSPDA VLKSAAKTFT GTPSILKKRH RDLLSPLSER 660 RSDKKLETDM TSSLTKDFSR LDVMFDESGT GSTSQASQSE PKTHSGASME EKENLCQAFN 720 GEQDNGGDRT ESFDDKAQKK DSNGINSHGN MAKEACDIDT KDKTDADASN KVVQRPSAVL 780 IEHNINDLLL FSPDQVGLKA DRPLLASSTR TPRNQFHKSF GAISNQGFAS ECLSGNACIV 840 VSSPTLKIKN SEGHSIAVTT VQCVTSSATA ENLVDNAGID AAIENHNIFG ETPFKRSIES 900 PSAWKSPWFI NSFVPGPRID TEITIEDIGY LMSPGDRSYD AIGLMKQLSE HTAAAYADAL 960 EVLGNETPES IVKARRSNNP NVNEDKENNQ LESRSHLASN ILAERRTLDF SECGTPGKGT 1020 ENGKSSTAMS SFSSPSYLLK GCR

Sequence ? help Back to Top

Protein Sequence Length: 1043 aa Download sequence

MEGDRTKSTP SVGLSISDGA QTMRALHGRT SGPTRRSTKG QWTAEEDEIL RKAVQRFKGK  60
NWKKIAECFK DRTDVQCLHR WQKVLNPELV KGPWSKEEDE LIIELVNKFG PKKWSTIAQH  120
LPGRIGKQCR ERWHNHLNPA INKEAWTQEE ELALIRAHQI FGNRWAELTK FLPGRTDNAI  180
KNHWNSSVKK KLDSYVASGL LDQFQFPLLA NQSQPMPSSS SRVQSNVDDS GAKCRTEAED  240
ISECSQESSM IGCSKSASDM ANAAVNTREQ QFHLSEMPGV AKEKISSPAL CSEEYYPSLE  300
DVNFSIPEIS CEAGYSASGD YQFSLPNLPN ISSIELGQES SGLPTHCIDA SESHEVMNAA  360
FQTSVGLNAP TSFVNMVTTS DKPELMLITD DECCRVLFSE AVNDGCFASE NFTQGSNIVE  420
LGGCTSSSLC QASDIQISET GRTPASQSNC PSRSEVLATS CCQYFVSPSV ASVGYGTLMS  480
GREPSQLNGQ PFGPQEQEFT MNAHDGFIYT NDDHTDNTDL PEQLYLAKDS LKLVPVNSFG  540
SESDAMQTCA TVDDEPNLPE EQDVGALCYE PPRFPSLDIP FFSCDLIPSG SDMQQEYSPL  600
GIRQLMMSSM NCITPFRLWD SPSRDDSPDA VLKSAAKTFT GTPSILKKRH RDLLSPLSER  660
RSDKKLETDM TSSLTKDFSR LDVMFDESGT GSTSQASQSE PKTHSGASME EKENLCQAFN  720
GEQDNGGDRT ESFDDKAQKK DSNGINSHGN MAKEACDIDT KDKTDADASN KVVQRPSAVL  780
IEHNINDLLL FSPDQVGLKA DRPLLASSTR TPRNQFHKSF GAISNQGFAS ECLSGNACIV  840
VSSPTLKIKN SEGHSIAVTT VQCVTSSATA ENLVDNAGID AAIENHNIFG ETPFKRSIES  900
PSAWKSPWFI NSFVPGPRID TEITIEDIGY LMSPGDRSYD AIGLMKQLSE HTAAAYADAL  960
EVLGNETPES IVKARRSNNP NVNEDKENNQ LESRSHLASN ILAERRTLDF SECGTPGKGT  1020
ENGKSSTAMS SFSSPSYLLK GCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein