PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275670.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 544aa MW: 57813.6 Da PI: 5.3163

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275670.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	303	348	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR++i +++ +L+el+P++ K +Ka++L + ++Y+k Lq XP_021275670.1 303 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDEIIDYVKFLQ 348 99*********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence
MDDYLDQYFS SSSWSDVNVN ERSSWVHCEP DQPNALLPSS IGVYQDDKTS SPVRMISSNH 60 TMGCLAAKHS IPSGESGCGV EHGLLSGEGE PQIDGQNCSS NSTKEMLNGS LAFANLELQF 120 NTAVQSSGSL SLGSPKDLSV VGDMTPSLSF NERGHVICNE GEPSEFRRSL TGLETLSPIP 180 KLWHPQAYDG VSSFPTLMGQ TRMQSSCLQG ENGTVDNDGN INRFVEIDKI LQPENLSASI 240 SAKGKQDIQN SLYSSFPAEH QITKTMIGLP SLLQSASPTP NNGCNGIGKP RVRARRGQAT 300 DPHSIAERLR REKIAERMKN LQELVPNSNK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG 360 AAGAVVPLIT DSQAEGSNGL SLSPLAGQGV DFSASPDQVV FEQEVVKLME SNVTMAMQYL 420 QSKGLCLMPV ALANAISNGK ASTSSSSSSG PASEERKKFG LAKGLVNNDI VHNTCSSNGL 480 AQNSNCSSSS SSSSSSSSSL PGVGIHYLSS DGSFMIGKLS SGLVANGCNG SFKQEEMNTL 540 CTAK

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence

MDDYLDQYFS SSSWSDVNVN ERSSWVHCEP DQPNALLPSS IGVYQDDKTS SPVRMISSNH  60
TMGCLAAKHS IPSGESGCGV EHGLLSGEGE PQIDGQNCSS NSTKEMLNGS LAFANLELQF  120
NTAVQSSGSL SLGSPKDLSV VGDMTPSLSF NERGHVICNE GEPSEFRRSL TGLETLSPIP  180
KLWHPQAYDG VSSFPTLMGQ TRMQSSCLQG ENGTVDNDGN INRFVEIDKI LQPENLSASI  240
SAKGKQDIQN SLYSSFPAEH QITKTMIGLP SLLQSASPTP NNGCNGIGKP RVRARRGQAT  300
DPHSIAERLR REKIAERMKN LQELVPNSNK TDKASMLDEI IDYVKFLQLQ VKVLSMSRLG  360
AAGAVVPLIT DSQAEGSNGL SLSPLAGQGV DFSASPDQVV FEQEVVKLME SNVTMAMQYL  420
QSKGLCLMPV ALANAISNGK ASTSSSSSSG PASEERKKFG LAKGLVNNDI VHNTCSSNGL  480
AQNSNCSSSS SSSSSSSSSL PGVGIHYLSS DGSFMIGKLS SGLVANGCNG SFKQEEMNTL  540
CTAK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	9e-59	bHLH family protein