PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275401.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

M-type_MADS

Protein Properties

Length: 529aa MW: 58374.9 Da PI: 4.9079

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275401.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.4	2.5e-20	8	58	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ ++ qvtfskRr +l KA+E+Sv Cd++va++ fs++g++ ++s XP_021275401.1 8 KRIEDVTRCQVTFSKRRSSLLRKANEISVFCDVDVALVAFSPSGRVSKFCS 58 79*********************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence
MDNKPEMKRI EDVTRCQVTF SKRRSSLLRK ANEISVFCDV DVALVAFSPS GRVSKFCSRE 60 RIEDVLERYV KLAPDKRYQE YELENEEGAS LAQILWCEKN LKATLQGITD RKRRGQAPSD 120 NFPGNPVLNR ARQNLNSRSR FLMQHNPRTW PYSPRVHNSL LDQRYQPKGI SGGVPGASCS 180 FAFNPLAASF PAIYQHPSYT QRTEIPPTYH QIQHQPFLWD PTAASIQNLQ LGVYGNSSMH 240 QAIIGNPALH CVPYQPLGTL GTSNLYQPMM PGILDQQLGV LGSSSVQQLM REDQITPVIP 300 NQQLGALGDS FLDKSLMGVG TTPYAQFQQA GVLGSPSVGR LANVEPLGPQ ENPTPTSYHN 360 YNNSNTQKDV SSLPSMFQLQ VDPNEMNLHF LGSPSYNTTQ NLVATPLLNS EKVSSEPVFT 420 NNIGSITTPT HGDGDNANNG SSGGNSNSNN GNNGIDNCDT NEKHPACLTQ ENPPPESPTD 480 SMFLNSLLNE EAIENDTSQP AGNQEDSFID WDGFALAENL NLEDFEILF

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence

MDNKPEMKRI EDVTRCQVTF SKRRSSLLRK ANEISVFCDV DVALVAFSPS GRVSKFCSRE  60
RIEDVLERYV KLAPDKRYQE YELENEEGAS LAQILWCEKN LKATLQGITD RKRRGQAPSD  120
NFPGNPVLNR ARQNLNSRSR FLMQHNPRTW PYSPRVHNSL LDQRYQPKGI SGGVPGASCS  180
FAFNPLAASF PAIYQHPSYT QRTEIPPTYH QIQHQPFLWD PTAASIQNLQ LGVYGNSSMH  240
QAIIGNPALH CVPYQPLGTL GTSNLYQPMM PGILDQQLGV LGSSSVQQLM REDQITPVIP  300
NQQLGALGDS FLDKSLMGVG TTPYAQFQQA GVLGSPSVGR LANVEPLGPQ ENPTPTSYHN  360
YNNSNTQKDV SSLPSMFQLQ VDPNEMNLHF LGSPSYNTTQ NLVATPLLNS EKVSSEPVFT  420
NNIGSITTPT HGDGDNANNG SSGGNSNSNN GNNGIDNCDT NEKHPACLTQ ENPPPESPTD  480
SMFLNSLLNE EAIENDTSQP AGNQEDSFID WDGFALAENL NLEDFEILF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	3e-22	MIKC_MADS family protein