PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275373.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family M-type_MADS
Protein Properties Length: 351aa    MW: 39807.5 Da    PI: 9.7967
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275373.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.67.8e-24957149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie k+ r++tf+kR++g++KKA+ELS+LCd+eva+iifs+ gkl+ +
  XP_021275373.1  9 KKIEHKTYRHITFAKRKAGLIKKAYELSTLCDVEVALIIFSPAGKLFLF 57
                    68*******************************************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MGRVKVQLKK IEHKTYRHIT FAKRKAGLIK KAYELSTLCD VEVALIIFSP AGKLFLFDGK  60
KRVEEILAHH VELPVHRRGW VPNQELIRRL ITQMSIEAGF GNHPSKSSRT NNMGIDSRLQ  120
EIQKEIVICS TQLEDVEKQL HCFLRNPSCL KSTSELQYHE MILEQTLELV HFRKRFLEAN  180
CSVQPTSKGF GDTIRPQLIS CREKASSGGS ISQGLNYNLS WQSQKDHHAP TDQSNGLQPS  240
RNLPESLVEK AQSPMTYLQG HRYLARNEVS SKPEVDGYMH RRASGIVNAN FPPRMDIMQP  300
ARATSNPTQR EAGTSMRTFC GNSSKLDSDA WFSPLMPKEC QAQGGTTRSF W
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77950.23e-36MIKC_MADS family protein