PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275308.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GATA

Protein Properties

Length: 538aa MW: 59784 Da PI: 6.948

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.3e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_021275308.1 7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGT 41 **************88888*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RVEPDDYEDH 60 RASRVKSISI NKNKEIKPLK RKPNHDTAVV APDYNQGIRK FVDEDTSNRS SSGSAISNSE 120 SCAQFGSGDA SDLTGPAQSN VWDSMVPSKK RTCVNRPKPS PVEKLTKDLY TILHEQSSYF 180 SGSSEEDLLL ESETPMVSVE IGHGSVLIRH PSSIAREEES EASSLSVENK QYSMNEAYSH 240 SSSFPTYNDS EGIKFSGHGF EKAKNPAGQG MQHEQIKRDK VQHEKSLILE SHKSPLCNID 300 LNDILNFEEF VKHITNEDQQ LLVKYLPPLD IVKLPDSLKS MFDSPQFKEN LCYFQQLLEE 360 GVFNISVPGV KAEDCKTLKR LALFNLTKSH WVERHNVLKK CRSGTGGSAI DRGPNAITSN 420 NMIIMKRSRD SQSQNFPEAR TLKSPKRVIM KTTYENKELI DNDGSCFSPR SLFALPPDGS 480 SLVLDSLRFV DESSDHDLLL DVPSNGSFPQ AELLHPTLGF GQQASTSSSS AHPHLVHP

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG TLANYTPLHA RVEPDDYEDH  60
RASRVKSISI NKNKEIKPLK RKPNHDTAVV APDYNQGIRK FVDEDTSNRS SSGSAISNSE  120
SCAQFGSGDA SDLTGPAQSN VWDSMVPSKK RTCVNRPKPS PVEKLTKDLY TILHEQSSYF  180
SGSSEEDLLL ESETPMVSVE IGHGSVLIRH PSSIAREEES EASSLSVENK QYSMNEAYSH  240
SSSFPTYNDS EGIKFSGHGF EKAKNPAGQG MQHEQIKRDK VQHEKSLILE SHKSPLCNID  300
LNDILNFEEF VKHITNEDQQ LLVKYLPPLD IVKLPDSLKS MFDSPQFKEN LCYFQQLLEE  360
GVFNISVPGV KAEDCKTLKR LALFNLTKSH WVERHNVLKK CRSGTGGSAI DRGPNAITSN  420
NMIIMKRSRD SQSQNFPEAR TLKSPKRVIM KTTYENKELI DNDGSCFSPR SLFALPPDGS  480
SLVLDSLRFV DESSDHDLLL DVPSNGSFPQ AELLHPTLGF GQQASTSSSS AHPHLVHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-139	GATA family protein