PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275116.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 446aa MW: 49175.3 Da PI: 6.648

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275116.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.8	3.6e-15	163	222	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_021275116.1 163 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 222 57*****************666664478446***********************98 PP
2	AP2	50.1	7.1e-16	265	316	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_021275116.1 265 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 316 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MADESPILTS FHQQAPKLED FLGDSSSIVR YSDSQTETQD SSLTQIYDHS GSAYFNEHQD 60 LKAITAFQAF STNSGSEVDD SVSMGRTQLT AVEFAGHSIE STGTELGFSN CPTAGALSLG 120 VNRSCENNNN NGTNDNNNNI KAIVSVDSDC SKKIADTFGQ RTSIYRGVTR HRWTGRYEAH 180 LWDNSCRREG QARKGRQVYL GGYDKEEKAA RAYDLAALKY WGPTATTNFP ISNYTKELEE 240 MKHVSKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE 300 EEAAEAYDIA AIKFRGVNAV TNFEMNRYDV EAIAKSSLPI GGAAKRLKLS LESEQKPIVN 360 HEQQPQCSSN SNNISFAPMQ PISAIPCGIP FDTAAAAAFY QQNLYHQLQA ANIGFSDPPG 420 SSSAMATQLN AMPQPAEFFL WPHQTY

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MADESPILTS FHQQAPKLED FLGDSSSIVR YSDSQTETQD SSLTQIYDHS GSAYFNEHQD  60
LKAITAFQAF STNSGSEVDD SVSMGRTQLT AVEFAGHSIE STGTELGFSN CPTAGALSLG  120
VNRSCENNNN NGTNDNNNNI KAIVSVDSDC SKKIADTFGQ RTSIYRGVTR HRWTGRYEAH  180
LWDNSCRREG QARKGRQVYL GGYDKEEKAA RAYDLAALKY WGPTATTNFP ISNYTKELEE  240
MKHVSKQEFI ASLRRKSSGF SRGASIYRGV TRHHQQGRWQ ARIGRVAGNK DLYLGTFATE  300
EEAAEAYDIA AIKFRGVNAV TNFEMNRYDV EAIAKSSLPI GGAAKRLKLS LESEQKPIVN  360
HEQQPQCSSN SNNISFAPMQ PISAIPCGIP FDTAAAAAFY QQNLYHQLQA ANIGFSDPPG  420
SSSAMATQLN AMPQPAEFFL WPHQTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.1	0.0	AP2 family protein