PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021275115.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 522aa MW: 57586.5 Da PI: 6.2378

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021275115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.5	4.5e-15	239	298	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_021275115.1 239 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEEKAARAYDLAALKYWG 298 57*****************666664478446***********************98 PP
2	AP2	49.8	8.8e-16	341	392	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_021275115.1 341 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 392 57**************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MAPASNWLSF SLSPMEMLRS SSEPQFVSYE GSSAASVSSP HYLIDNFYAN GWTNPKHQVF 60 FTEGEESQCK EAHPPAMADE SPILTSFHQQ APKLEDFLGD SSSIVRYSDS QTETQDSSLT 120 QIYDHSGSAY FNEHQDLKAI TAFQAFSTNS GSEVDDSVSM GRTQLTAVEF AGHSIESTGT 180 ELGFSNCPTA GALSLGVNRS CENNNNNGTN DNNNNIKAIV SVDSDCSKKI ADTFGQRTSI 240 YRGVTRHRWT GRYEAHLWDN SCRREGQARK GRQVYLGGYD KEEKAARAYD LAALKYWGPT 300 ATTNFPISNY TKELEEMKHV SKQEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG 360 RVAGNKDLYL GTFATEEEAA EAYDIAAIKF RGVNAVTNFE MNRYDVEAIA KSSLPIGGAA 420 KRLKLSLESE QKPIVNHEQQ PQCSSNSNNI SFAPMQPISA IPCGIPFDTA AAAAFYQQNL 480 YHQLQAANIG FSDPPGSSSA MATQLNAMPQ PAEFFLWPHQ TY

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MAPASNWLSF SLSPMEMLRS SSEPQFVSYE GSSAASVSSP HYLIDNFYAN GWTNPKHQVF  60
FTEGEESQCK EAHPPAMADE SPILTSFHQQ APKLEDFLGD SSSIVRYSDS QTETQDSSLT  120
QIYDHSGSAY FNEHQDLKAI TAFQAFSTNS GSEVDDSVSM GRTQLTAVEF AGHSIESTGT  180
ELGFSNCPTA GALSLGVNRS CENNNNNGTN DNNNNIKAIV SVDSDCSKKI ADTFGQRTSI  240
YRGVTRHRWT GRYEAHLWDN SCRREGQARK GRQVYLGGYD KEEKAARAYD LAALKYWGPT  300
ATTNFPISNY TKELEEMKHV SKQEFIASLR RKSSGFSRGA SIYRGVTRHH QQGRWQARIG  360
RVAGNKDLYL GTFATEEEAA EAYDIAAIKF RGVNAVTNFE MNRYDVEAIA KSSLPIGGAA  420
KRLKLSLESE QKPIVNHEQQ PQCSSNSNNI SFAPMQPISA IPCGIPFDTA AAAAFYQQNL  480
YHQLQAANIG FSDPPGSSSA MATQLNAMPQ PAEFFLWPHQ TY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	0.0	AP2 family protein