PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021275023.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 223aa    MW: 25393.8 Da    PI: 6.6325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021275023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.9e-08119159954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_021275023.1 119 ARHRRERISEKMRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 159
                     699*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MDINQTMLPS HTWNLEMSTE DHILHDQVPL NPIWPGYPLQ THQTPSSTSS RIPSATTVYR  60
NQMGQLVEEE EEPEEELSAM KEMLYKIAAM QPVDIDPATI RKPKRRNVRI SDDPQSVAAR  120
HRRERISEKM RILQRLVPGG TKMDTASMLD EAIRYVKFLK RQIRLLQPNN QQPPCHVNWQ  180
VTPNKPLVST SSTSLETQQA GPEFTFGGNG GNPLCFTHEV ISD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00120.13e-49bHLH family protein