PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274903.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 296aa    MW: 33557.5 Da    PI: 10.1603
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274903.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.5e-191762147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G+++W+ Ia++++ gR++k+c++rw++ 
   XP_021274903.1 17 RGHWRPAEDEKLEQLVEQYGPKNWNFIAQHLQ-GRSGKSCRLRWYNQ 62
                     899*****************************.************96 PP
2Myb_DNA-binding47.83.3e-1569112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++T+eE+e l+ a+   G++ W++Iar ++ gRt++ +k++++ 
   XP_021274903.1  69 KKPFTEEEEEMLLTAHGIQGNK-WASIARLFP-GRTDNAVKNHYHV 112
                      689*******************.*********.***********86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MGNFRGNSSD SEKSCHRGHW RPAEDEKLEQ LVEQYGPKNW NFIAQHLQGR SGKSCRLRWY  60
NQLDPNINKK PFTEEEEEML LTAHGIQGNK WASIARLFPG RTDNAVKNHY HVIMARRKRE  120
KLLIYSKRTG RGNPDHSKKN NVGGKFEGFS RPQPKSDSKL GFCRFQVTHD RQGFSLLSSS  180
NSSPSWLSGR GSTITNDSSG YYDGLSRERK DYVRASDQDE LVKKGCSNFV GPKAVHVHHS  240
FTFSNFGSEG ETCRRGLVKF TDNRSALWNL HIVSQGEGSI KHKDIPLIDF LGVGIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116121RRKREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.16e-69MYB family protein