PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274874.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HSF
Protein Properties Length: 296aa    MW: 32990.7 Da    PI: 6.799
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274874.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind120.49.6e-38101012102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+ ++++isw+eng++fvv+++ +fak++Lp+yFkh+nf+SFvRQLn+YgF+kv  ++         weF++++Fk+g+kell++
  XP_021274874.1  10 FLTKTYQLVDDPITDDVISWNENGTTFVVWKTADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDK---------WEFANENFKRGQKELLSE 95 
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k+
  XP_021274874.1  96 IRRRKT 101
                     ***986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MAQRSVPAPF LTKTYQLVDD PITDDVISWN ENGTTFVVWK TADFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKVVPDKWEF ANENFKRGQK ELLSEIRRRK TVTSSPANGK TAGAGPSSPT  120
NSGEDLGSTS TSSPDSKNPG SVETTPAAVT QFADLSDENE KLKKDNEMLS SELAQAKKQC  180
DELVAFLTEC VKVGPDQINR IMRQGSFGST RDGDDRGRSH DVDDLHDHDQ VVDDDDEKGR  240
KEGNGSLKLF GVWLKGAERK RAREEKIVYG GPHAKEMKTV DFRHVPLVMK SGKVCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-99HSF family protein