PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274872.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

Trihelix

Protein Properties

Length: 471aa MW: 54338.8 Da PI: 6.1275

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274872.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.6	9.5e-30	40	124	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m+ ++r++ k+plWeevs+k++e g++rs+k+Ckek+en+ k+++++keg+++r+++ +++++f+qlea XP_021274872.1 40 RWPRQETLALLKIRSDMDVAFRDSGVKAPLWEEVSRKLAELGYNRSAKKCKEKFENIYKYHRRTKEGRSGRSNG--KNYRFFEQLEA 124 8******************************************************************98554..47*****85 PP
2	trihelix	106	2.7e-33	304	389	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev aLi++r++++ +++++ k+plWee+sk+m++ g+ rs+k+Ckekwen+nk++k++ke++k+r +e+s+tcpyf+ql+a XP_021274872.1 304 RWPKDEVEALIRLRTNLDLQYQENGPKGPLWEEISKAMKKLGYDRSAKRCKEKWENMNKYFKRVKESNKRR-PEDSKTCPYFHQLDA 389 8******************************************************************97.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 471 aa Download sequence
MMENSGFPEN NTVADNVSLE NEEEVTVKNE ESERNFPGNR WPRQETLALL KIRSDMDVAF 60 RDSGVKAPLW EEVSRKLAEL GYNRSAKKCK EKFENIYKYH RRTKEGRSGR SNGKNYRFFE 120 QLEALDHHPS LLPPATGHIN TSIQPLSVIH DAIPCSIRNP VLSFNETSAS TTSSSSKESD 180 GTRKKKRKLT EFFERLMTEV MEKQENLQKK FIEAIEKSEQ DRMAREEAWK MQELARIKRE 240 RELLVQERSI AAAKDAAVLA FLQKFSDQAT SVRLPETPFP VEKIVERQEN SNGSESYMHL 300 SSSRWPKDEV EALIRLRTNL DLQYQENGPK GPLWEEISKA MKKLGYDRSA KRCKEKWENM 360 NKYFKRVKES NKRRPEDSKT CPYFHQLDAL YKEKTKRGDG SVITGYELKP EELLMHMMSA 420 QDERPHQESV TEDGESGNAD QNQEENGNAE EEEGDAYQIV ANDPSPMAII G

Sequence ? help Back to Top

Protein Sequence Length: 471 aa Download sequence

MMENSGFPEN NTVADNVSLE NEEEVTVKNE ESERNFPGNR WPRQETLALL KIRSDMDVAF  60
RDSGVKAPLW EEVSRKLAEL GYNRSAKKCK EKFENIYKYH RRTKEGRSGR SNGKNYRFFE  120
QLEALDHHPS LLPPATGHIN TSIQPLSVIH DAIPCSIRNP VLSFNETSAS TTSSSSKESD  180
GTRKKKRKLT EFFERLMTEV MEKQENLQKK FIEAIEKSEQ DRMAREEAWK MQELARIKRE  240
RELLVQERSI AAAKDAAVLA FLQKFSDQAT SVRLPETPFP VEKIVERQEN SNGSESYMHL  300
SSSRWPKDEV EALIRLRTNL DLQYQENGPK GPLWEEISKA MKKLGYDRSA KRCKEKWENM  360
NKYFKRVKES NKRRPEDSKT CPYFHQLDAL YKEKTKRGDG SVITGYELKP EELLMHMMSA  420
QDERPHQESV TEDGESGNAD QNQEENGNAE EEEGDAYQIV ANDPSPMAII G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	184	189	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-128	Trihelix family protein