PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274823.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 811aa    MW: 88878.1 Da    PI: 6.183
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-20118173156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k +++t++q++eLe++F+++++p++++r eL+++l L+ +q+k+WFqNrR+++k
  XP_021274823.1 118 KKKYHRHTPHQIQELESFFKECPHPDEKQRLELSRRLALESKQIKFWFQNRRTQMK 173
                     79999************************************************999 PP
2START1749.4e-553195412205
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     +a++a++elvk+++ ++p+W k      e +n +e++++f++  +     + +ea r++ +v+     lve+l+d++ +W e+++    +a+t++
  XP_021274823.1 319 IALAAMDELVKMVQMDSPLWIKGLdggiETLNHEEYRRTFSSCIGmkpsgYATEATRETSLVFLRGLALVETLMDVN-RWAEMFPcmisRAATID 412
                     6899************************************98888********************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+ssg      +alq+m ae+q+lsplvp R + f+R+++q+++ +w++vdvS+d  q+  +++ +  +++lpSg++i++++n +skvtwveh +
  XP_021274823.1 413 VLSSGtgvtrdNALQVMDAEFQVLSPLVPvRQVRFLRFCKQHTERVWAVVDVSIDASQDAATTQMFPNCRRLPSGCVIQDMDNKYSKVTWVEHSE 507
                     ************************************************************99********************************* PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqce 205
                     +++  +h llr+l+++g  +ga +w+atlqrqc 
  XP_021274823.1 508 YDDGAVHHLLRPLLSYGFGFGAHRWLATLQRQCD 541
                     ********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    
MSFGDLIKTS SSSDSGGMGA RIVVADIVPP SNMLSGAIVE PPLLTQHIPK SMQSSPSLSL  60
SYKKMDAHGE MGLIGENFDP SLVGRMKEDG YESRSGSDNF EGASGDDQDA ADDGRPKKKK  120
YHRHTPHQIQ ELESFFKECP HPDEKQRLEL SRRLALESKQ IKFWFQNRRT QMKTQLERHE  180
NVILRQESDK LRAENDLLKQ AMSSPICNSC GGPAVPGEIS YEQHQLRIEN ARLKDELNRI  240
CALTNKFLGR PLSSSASPIP SQGLNSNLEL AVGRNDFGGL NNAGTTLPLG FDFADGAMMP  300
LMKTMANEMP YDRSAFVDIA LAAMDELVKM VQMDSPLWIK GLDGGIETLN HEEYRRTFSS  360
CIGMKPSGYA TEATRETSLV FLRGLALVET LMDVNRWAEM FPCMISRAAT IDVLSSGTGV  420
TRDNALQVMD AEFQVLSPLV PVRQVRFLRF CKQHTERVWA VVDVSIDASQ DAATTQMFPN  480
CRRLPSGCVI QDMDNKYSKV TWVEHSEYDD GAVHHLLRPL LSYGFGFGAH RWLATLQRQC  540
DCXAVLMSPN IPGEENTGIT PAGRKNMLKL AQRMTYNFCA GVCASSVHKW DKLSVGNVGE  600
DVRVMTRKNI DDPGEPAGVV LSAATSVWMP ITQQRLFDFL RDERMRSQWD ILSNGGPMQE  660
MVKIAKGPGH GNCVSLLRGS AINANENNML ILQETWSDAS GGIVVYAPVD ISSISVVMNG  720
GDSAYVALLP SGFAILPGIS PSYHGGQSNS NGPLVKPDID GSISGGCLLT VGFQILVNNL  780
PTAKLTVESV ETVNNLISCT IQKIKAALTV T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein