PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274750.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 512aa MW: 57059.9 Da PI: 6.662

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	53.4	6.6e-17	155	204	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_021274750.1 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 204 78*****************......55**********************997 PP
2	AP2	42.7	1.4e-13	247	297	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a++ a+ k +g XP_021274750.1 247 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDTAAIKCNG 297 89******.7**5553..2.26******99********98766 PP

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence
MWDLNDSPDQ PRDDESEGCS SQKTSIDGDE DKGKRXGSVS NSSSSAVVIE DGSEEEDGER 60 LRAALKKRSS KIFGFSVPHE EESMESDPAP VTRQXFPLDQ DPEMGATSAG SGQGXPRAHW 120 VGVKFCQSEP LAAGKSAEVS QPMKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV 180 YLGGFDTAHA AARAYDRAAI KFRGVEADIN FSIEDYEEDL KQMSNLTKEE FVHVLRRQST 240 GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EIEAARAYDT AAIKCNGKDA 300 VTNFDPSIYE NELNSGETSG NAGDHNLDLS LGNSTSKQNN LEFGADRQNA MGDQHNLPPE 360 ADWRYRGFRP KLNLQQEPSR SDDPRHRRSD AYSEAETMQL LSQTHIQSPA AVKSNEMPRY 420 GQFRRPGENH MFHILPPHIN PSTYQIHFPS SSNGGRIGSD LSLSSNDQQW QSGPHQLFAN 480 AAASSGFHRR LDLPNLAAEN GFHSLMRPLT AS

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence

MWDLNDSPDQ PRDDESEGCS SQKTSIDGDE DKGKRXGSVS NSSSSAVVIE DGSEEEDGER  60
LRAALKKRSS KIFGFSVPHE EESMESDPAP VTRQXFPLDQ DPEMGATSAG SGQGXPRAHW  120
VGVKFCQSEP LAAGKSAEVS QPMKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHA AARAYDRAAI KFRGVEADIN FSIEDYEEDL KQMSNLTKEE FVHVLRRQST  240
GFPRGSSKYR GVTLHKCGRW EARMGQFLGK KYVYLGLFDT EIEAARAYDT AAIKCNGKDA  300
VTNFDPSIYE NELNSGETSG NAGDHNLDLS LGNSTSKQNN LEFGADRQNA MGDQHNLPPE  360
ADWRYRGFRP KLNLQQEPSR SDDPRHRRSD AYSEAETMQL LSQTHIQSPA AVKSNEMPRY  420
GQFRRPGENH MFHILPPHIN PSTYQIHFPS SSNGGRIGSD LSLSSNDQQW QSGPHQLFAN  480
AAASSGFHRR LDLPNLAAEN GFHSLMRPLT AS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-129	AP2 family protein