PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274735.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GRF

Protein Properties

Length: 582aa MW: 62341.3 Da PI: 7.6415

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274735.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.7	2.4e-24	232	276	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_021274735.1 232 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 276 79****************************************985 PP
2	QLQ	57.2	5.2e-20	162	198	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy+ an+PvP++Ll a++k XP_021274735.1 162 GPFTPSQWIELEHQALIYKYFTANVPVPSNLLIALKK 198 59******************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MDFGVLGLEG IVGPDNGAPS QTQLPPPPLL SAEAKPKLLG SGFTKQERSS DSAEDHCKSY 60 KLPRTDDLST PKTMPLHQGT PLLRSNSLVS ADTSHQEHML SFSSLKSEVP FISKDVGFLE 120 RSTQNSGLSY YQHTPSTYTR NAGYGSGSLN ASMHGPLTGV SGPFTPSQWI ELEHQALIYK 180 YFTANVPVPS NLLIALKKSL YPYGLSSSSA GSLPPNSLGW GSFHLGYAGN TDPEPGRCRR 240 TDGKKWRCSR DAVADQKYCE RHINRGRHRS RKPVEGQTGH AGSGTTNSKV VPMSSSMSAS 300 VITSGGASNS LAIAQQQQLK NLQSDVANPS ADTLVNRLFL NKEDVRGRVQ DPRGLSMMSS 360 STNLKSNDST FTVTKQDFSN QETQDENPLR QFIDDWPKDQ SSRSVITWPE ELKSDWTQLS 420 MSIPMASSEF SSSSSSPVQD KLALSPLRLS REFDPIQMGL GVNSDISDQN QKQANWIPIS 480 WGSSMGGPLG EVLTHTTSNV GSCKNSSALT LLSEGWDGGP QLGSSPTGVL QKAPFGSLSN 540 SSSGSSPIAE NKKPHGGGSL CDDVLGSTLV SSASIPSVIR SL

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MDFGVLGLEG IVGPDNGAPS QTQLPPPPLL SAEAKPKLLG SGFTKQERSS DSAEDHCKSY  60
KLPRTDDLST PKTMPLHQGT PLLRSNSLVS ADTSHQEHML SFSSLKSEVP FISKDVGFLE  120
RSTQNSGLSY YQHTPSTYTR NAGYGSGSLN ASMHGPLTGV SGPFTPSQWI ELEHQALIYK  180
YFTANVPVPS NLLIALKKSL YPYGLSSSSA GSLPPNSLGW GSFHLGYAGN TDPEPGRCRR  240
TDGKKWRCSR DAVADQKYCE RHINRGRHRS RKPVEGQTGH AGSGTTNSKV VPMSSSMSAS  300
VITSGGASNS LAIAQQQQLK NLQSDVANPS ADTLVNRLFL NKEDVRGRVQ DPRGLSMMSS  360
STNLKSNDST FTVTKQDFSN QETQDENPLR QFIDDWPKDQ SSRSVITWPE ELKSDWTQLS  420
MSIPMASSEF SSSSSSPVQD KLALSPLRLS REFDPIQMGL GVNSDISDQN QKQANWIPIS  480
WGSSMGGPLG EVLTHTTSNV GSCKNSSALT LLSEGWDGGP QLGSSPTGVL QKAPFGSLSN  540
SSSGSSPIAE NKKPHGGGSL CDDVLGSTLV SSASIPSVIR SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-108	GRF family protein