PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274734.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

GRF

Protein Properties

Length: 621aa MW: 66495.8 Da PI: 7.4351

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274734.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.5	2.6e-24	232	276	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_021274734.1 232 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 276 79****************************************985 PP
2	QLQ	57.1	5.6e-20	162	198	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+ +L++Q+l+yKy+ an+PvP++Ll a++k XP_021274734.1 162 GPFTPSQWIELEHQALIYKYFTANVPVPSNLLIALKK 198 59******************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence
MDFGVLGLEG IVGPDNGAPS QTQLPPPPLL SAEAKPKLLG SGFTKQERSS DSAEDHCKSY 60 KLPRTDDLST PKTMPLHQGT PLLRSNSLVS ADTSHQEHML SFSSLKSEVP FISKDVGFLE 120 RSTQNSGLSY YQHTPSTYTR NAGYGSGSLN ASMHGPLTGV SGPFTPSQWI ELEHQALIYK 180 YFTANVPVPS NLLIALKKSL YPYGLSSSSA GSLPPNSLGW GSFHLGYAGN TDPEPGRCRR 240 TDGKKWRCSR DAVADQKYCE RHINRGRHRS RKPVEGQTGH AGSGTTNSKV VPMSSSMSAS 300 VITSGGASNS LAIAQQQQLK NLQSDVANPS ADTLVNRLFL NKEDVRGRVQ DPRGLSMMSS 360 STNLKSNDST FTVTKQGIPF AESSQSVFGH VASDSLVNPS HRSSYVNSKE YGAFLDFSNQ 420 ETQDENPLRQ FIDDWPKDQS SRSVITWPEE LKSDWTQLSM SIPMASSEFS SSSSSPVQDK 480 LALSPLRLSR EFDPIQMGLG VNSDISDQNQ KQANWIPISW GSSMGGPLGE VLTHTTSNVG 540 SCKNSSALTL LSEGWDGGPQ LGSSPTGVLQ KAPFGSLSNS SSGSSPIAEN KKPHGGGSLC 600 DDVLGSTLVS SASIPSVIRS L

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence

MDFGVLGLEG IVGPDNGAPS QTQLPPPPLL SAEAKPKLLG SGFTKQERSS DSAEDHCKSY  60
KLPRTDDLST PKTMPLHQGT PLLRSNSLVS ADTSHQEHML SFSSLKSEVP FISKDVGFLE  120
RSTQNSGLSY YQHTPSTYTR NAGYGSGSLN ASMHGPLTGV SGPFTPSQWI ELEHQALIYK  180
YFTANVPVPS NLLIALKKSL YPYGLSSSSA GSLPPNSLGW GSFHLGYAGN TDPEPGRCRR  240
TDGKKWRCSR DAVADQKYCE RHINRGRHRS RKPVEGQTGH AGSGTTNSKV VPMSSSMSAS  300
VITSGGASNS LAIAQQQQLK NLQSDVANPS ADTLVNRLFL NKEDVRGRVQ DPRGLSMMSS  360
STNLKSNDST FTVTKQGIPF AESSQSVFGH VASDSLVNPS HRSSYVNSKE YGAFLDFSNQ  420
ETQDENPLRQ FIDDWPKDQS SRSVITWPEE LKSDWTQLSM SIPMASSEFS SSSSSPVQDK  480
LALSPLRLSR EFDPIQMGLG VNSDISDQNQ KQANWIPISW GSSMGGPLGE VLTHTTSNVG  540
SCKNSSALTL LSEGWDGGPQ LGSSPTGVLQ KAPFGSLSNS SSGSSPIAEN KKPHGGGSLC  600
DDVLGSTLVS SASIPSVIRS L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-120	GRF family protein