PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021274640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 209aa MW: 23044.1 Da PI: 6.5273 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 59.8 | 3.3e-19 | 22 | 63 | 8 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 rqv fskRr g++KKA EL++LC++e a+++fs+ gk + + XP_021274640.1 22 ARQVAFSKRRSGLFKKARELCTLCAVETALVVFSPGGKAFSF 63 59***********************************97766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence |
MAGSSSKGRR RTQMWMIPGA DARQVAFSKR RSGLFKKARE LCTLCAVETA LVVFSPGGKA 60 FSFGHPGVDT IMNRLPNLSK PDLEAIQCTE AEYEASLREL NKEYSDITEK LNAEKLRGER 120 LKQMRMESQS QGQSLVERPV DELNLEELLT LKSMLEEFKV KLRKRMQELS VEAAASTSIL 180 AGESDASLGG TTEGNSSADP HDHDVGHAN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-35 | M-type_MADS family protein |