PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274588.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB_related
Protein Properties Length: 328aa    MW: 35520.1 Da    PI: 7.1879
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.94.2e-1293137347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r     Rt+ q+ s+ qky
   XP_021274588.1  93 PWTEEEHRMFLLGLHKLGKGDWRGISRNYVISRTPTQVASHAQKY 137
                      8*****************************89************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLSQYSGS NSGAHNGNGS  60
GSPGEGPDHA EGYASEDFVP GSSSSRERKK GVPWTEEEHR MFLLGLHKLG KGDWRGISRN  120
YVISRTPTQV ASHAQKYFIR QSNVSRRKRR SSLFDIVADE PVDTAMVSQD LFSANHLQAE  180
TQSNDQLPVP PPLDEEDESM DSNNSNDGET VPPKSESSQP CYPVVYPAYF PPFIPFSFPY  240
WMGGNTEPTK KDTHEVVKPT AVHSKSPINV DELVGMSKLS LGESIGDNGP SSLSLKLLDG  300
SSRQSAFHAN PASGSSSMNS SGSPIHAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-102MYB_related family protein