PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274553.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family B3
Protein Properties Length: 482aa    MW: 55707.8 Da    PI: 9.5693
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274553.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.23.5e-1929118399
                     EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                     k+   +d+ + + l++p+kf++++g +   s  ++l+ +sg +W v+l   k++g ++l++GWkeF++   Lk g f+vFk++g+ +f   v +f
  XP_021274553.1  29 KII-LEDTIRYSKLRFPRKFVTKYGDS--LSSPVQLMVPSGSTWHVEL--IKSDGDVWLQNGWKEFAEHYSLKHGHFLVFKYQGDCNF--QVLIF 116
                     444.478888899***********877..5557***************..**********************************9999..99999 PP

                     -S CS
              B3  98 rk 99 
                     ++
  XP_021274553.1 117 DT 118
                     87 PP
2B352.77.7e-17235330195
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f+ ++ ps+ +  + ++lp +f++++ ++k +  ++tl +++ ++W  k+ +y  ++k  + vl +GW  F ++n+L+ gD++vF+l+++++  l
  XP_021274553.1 235 FVIEMQPSYINPGRKVCLPLNFITKCLKEKVG--DVTLCTLDRKTWPAKYyCYltNNKYTKAVLHNGWTAFMQDNKLQLGDVCVFELIEQTKILL 327
                     4555667777777888**********766666..69999***********44498888888*************************998655545 PP

                     EEE CS
              B3  93 vvk 95 
                     +v 
  XP_021274553.1 328 KVV 330
                     554 PP
3B364.81.4e-20385482197
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     f+ v+ p++ ++++ + +p kfa+++  +ke   +++l+ ++gr+W vk+++  ++++++   + + W+ Fv++n+L++gD++vF+l++r+e+++
  XP_021274553.1 385 FKVVMQPAYLGARCSVNIPYKFAKTYVDEKED--QVILQVSDGRRWIVKFSVkvTNSGQHkARFYDTWRAFVQDNNLQVGDVCVFELINRDETSF 477
                     556778899999**************666555..6***************8876555554688999**********************9988888 PP

                     EEEEE CS
              B3  93 vvkvf 97 
                     +v++f
  XP_021274553.1 478 KVSIF 482
                     99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    
MAGPWNKASS SQREINPSMF TPKTPHFFKI ILEDTIRYSK LRFPRKFVTK YGDSLSSPVQ  60
LMVPSGSTWH VELIKSDGDV WLQNGWKEFA EHYSLKHGHF LVFKYQGDCN FQVLIFDTSA  120
SEIEYPHISR NMDRDEECRE PNQEEEAKDG SVEVLYETPR VRKTRQNSQT PCLRPRKILR  180
RTTLSDKYKR DCEDVSSAEG YLKTKVPRGR HAFGDNEHAT ALQRATAFKS KNFFFVIEMQ  240
PSYINPGRKV CLPLNFITKC LKEKVGDVTL CTLDRKTWPA KYYCYLTNNK YTKAVLHNGW  300
TAFMQDNKLQ LGDVCVFELI EQTKILLKVV IHRGGINSLA NCDNGRLSTQ GSTKCRHLLM  360
PPLSSHEKAR AMLRASSFRS ENPFFKVVMQ PAYLGARCSV NIPYKFAKTY VDEKEDQVIL  420
QVSDGRRWIV KFSVKVTNSG QHKARFYDTW RAFVQDNNLQ VGDVCVFELI NRDETSFKVS  480
IF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-43B3 family protein